GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
         (89 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    26   3.7  
AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical ...    25   4.9  
AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical ...    25   4.9  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    25   8.6  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    25   8.6  

>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 61  TGDDVVDMHTGQQVLERCLSTEEKLEKP 88
           T D+V+D   G  + ERC ++ E L  P
Sbjct: 254 TDDEVIDFSHGVSIYERCPTSVEPLWVP 281


>AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical
          protein ZK1025.4b protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 12 YHIKHVTARLVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETG 62
          YH  +V  R  P  L        IK +  +L  V +NGT+ K  + G   G
Sbjct: 42 YHKVYVDYRTSPPRLRIFSLNPCIKASNYLLVHVYYNGTITKLKLNGYSFG 92


>AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical
          protein ZK1025.4a protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 12 YHIKHVTARLVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETG 62
          YH  +V  R  P  L        IK +  +L  V +NGT+ K  + G   G
Sbjct: 42 YHKVYVDYRTSPPRLRIFSLNPCIKASNYLLVHVYYNGTITKLKLNGYSFG 92


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 28  FLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGD 63
           F++NL+R+   + +    +  G ++ C VA D+ G+
Sbjct: 148 FIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN 183


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 28  FLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGD 63
           F++NL+R+   + +    +  G ++ C VA D+ G+
Sbjct: 148 FIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN 183


>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 21  LVPKDLNFLQNLNRIKVAEDILAWVNFNGTLM 52
           L+P +LN    +N  +  E I  ++NF+G L+
Sbjct: 303 LIPTNLNNKNKMNPTRSHEFIKDYLNFDGCLL 334


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 21  LVPKDLNFLQNLNRIKVAEDILAWVNFNGTLM 52
           L+P +LN    +N  +  E I  ++NF+G L+
Sbjct: 303 LIPTNLNNKNKMNPTRSHEFIKDYLNFDGCLL 334


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,570
Number of Sequences: 27539
Number of extensions: 82011
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 12,573,161
effective HSP length: 68
effective length of query: 21
effective length of database: 10,700,509
effective search space: 224710689
effective search space used: 224710689
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)