Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001049-TA|BGIBMGA001049-PA|undefined
(89 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g40020.1 68417.m05666 hypothetical protein 31 0.094
At4g24760.1 68417.m03545 expressed protein 29 0.50
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter... 27 2.0
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter... 27 2.0
At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containi... 26 2.7
At3g26980.1 68416.m03376 ubiquitin family protein contains INTER... 26 3.5
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 26 3.5
At3g30380.1 68416.m03835 expressed protein ; expression supporte... 25 6.2
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote... 25 8.1
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 25 8.1
At1g52565.1 68414.m05934 expressed protein 25 8.1
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 31.1 bits (67), Expect = 0.094
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 22 VPKDLNFLQNLN---RIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERC 78
V KD L+N + RI+ E +LAW + CI G++ + ++D ++LE
Sbjct: 224 VRKDAELLKNTSERLRIEAEESLLAWNGKESVFVTCIKRGEDEKNSLLD--ENNRLLEAL 281
Query: 79 LSTEEKLEK 87
++ E +K
Sbjct: 282 VAAENLSKK 290
>At4g24760.1 68417.m03545 expressed protein
Length = 365
Score = 28.7 bits (61), Expect = 0.50
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 50 TLMKC-IVAGDETGDDVVDMHTGQQVLERCLSTEEKL 85
TL++C ++ T DDVVD G+Q+ E C E L
Sbjct: 198 TLVRCPVLVIHGTADDVVDFSHGKQLWELCQEKYEPL 234
>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
(MRP2) almost identical to MgATP-energized glutathione
S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
Length = 1623
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 66 VDMHTGQQVLERCLSTE 82
+D H GQQV E+C+ E
Sbjct: 770 LDAHVGQQVFEKCIKRE 786
>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
(MRP1) identical to glutathione S-conjugate transporting
ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
Length = 1622
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 66 VDMHTGQQVLERCLSTE 82
+D H GQQV E+C+ E
Sbjct: 770 LDAHVGQQVFEKCIKRE 786
>At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 880
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Query: 50 TLMKCIVAGDETGD--DVVDM 68
T ++C++ GDETGD +V+D+
Sbjct: 848 TYVECLMEGDETGDCSEVIDL 868
>At3g26980.1 68416.m03376 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 120
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 20 RLVPKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGDETGDDVVDMHTGQQVLERCL 79
++VPK + ++ +N K+ E+ T+ +C D+ V+ MH Q+
Sbjct: 46 KIVPKSASDIKLINAGKILEN-------GKTVAQCKAPFDDLPKSVITMHVVVQLSPTKA 98
Query: 80 STEEKLEKPD 89
E+K+EK +
Sbjct: 99 RPEKKIEKEE 108
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 23 PKDLNFLQNLNRIKVAEDILAWVNFNGTLMKCIVAGD 59
P D + N + + E++ A VN +G L+KC + G+
Sbjct: 171 PTDPKYSSNEVYVDLVEEMDAIVNRDGELVKCEIYGE 207
>At3g30380.1 68416.m03835 expressed protein ; expression supported
by MPSS
Length = 399
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 50 TLMKC-IVAGDETGDDVVDMHTGQQVLERCLSTEEKL 85
+ +KC ++ T DDVV+ G+Q+ E C E L
Sbjct: 197 SFVKCPVLVIHGTSDDVVNWSHGKQLFELCKEKYEPL 233
>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane
protein kinase, putative CLV1 receptor kinase,
Arabidopsis thaliana, EMBL:ATU96879
Length = 783
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 22 VPKDLNFLQNLNRIKVAED 40
+P +L LQNLNR++V E+
Sbjct: 33 LPPELGNLQNLNRLQVDEN 51
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 22 VPKDLNFLQNLNRIKVAEDIL 42
+P DL FLQNL + ++ + L
Sbjct: 91 IPSDLGFLQNLQSLNLSNNSL 111
>At1g52565.1 68414.m05934 expressed protein
Length = 129
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 47 FNGTLMKCIVAGDETGDDVVDMHTGQQVLERCLSTEEK 84
F+ T + ++ +G+ D QQ+L CLS+EEK
Sbjct: 19 FSSTALFLAISRQFSGNQTSD----QQILRSCLSSEEK 52
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,215
Number of Sequences: 28952
Number of extensions: 80015
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 11
length of query: 89
length of database: 12,070,560
effective HSP length: 68
effective length of query: 21
effective length of database: 10,101,824
effective search space: 212138304
effective search space used: 212138304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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