GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001048-TA|BGIBMGA001048-PA|IPR000033|Low-density
lipoprotein receptor, YWTD repeat, IPR006209|EGF-like, IPR002172|Low
density lipoprotein-receptor, class A, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR006210|EGF
         (1195 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   1.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 258 YPCKKNNAGCSHLCLLSPDPPGYNCACPTG 287
           Y C  N      +C +S D  GY C CP+G
Sbjct: 378 YDCDSNPCQNGGVCRIS-DGGGYICDCPSG 406



 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%)

Query: 566 NPCADDNGGCSHL---CFNRPDDYICGCP 591
           N C  D+  C HL   C ++  DY C CP
Sbjct: 418 NEC--DSNPCKHLDAICQDKLGDYACYCP 444



 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 566 NPCADDNGGCSHLCFNRPDDYICGCPLG 593
           NPC+  N G    C    +DY C C LG
Sbjct: 305 NPCS--NAGTLD-CVQLVNDYHCNCKLG 329



 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 1089 VYWAVSRQCDGQQDCEDGRDEAECGACG 1116
            V W  +  C+ Q  C   +++ +C  CG
Sbjct: 100  VDWCSTNPCENQATCVQNKNQYQC-LCG 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,680
Number of Sequences: 317
Number of extensions: 12504
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 6
length of query: 1195
length of database: 114,650
effective HSP length: 65
effective length of query: 1130
effective length of database: 94,045
effective search space: 106270850
effective search space used: 106270850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)