GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001048-TA|BGIBMGA001048-PA|IPR000033|Low-density
lipoprotein receptor, YWTD repeat, IPR006209|EGF-like, IPR002172|Low
density lipoprotein-receptor, class A, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR006210|EGF
         (1195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    29   2.9  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    29   5.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   6.8  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    28   9.0  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 209 YWTDWQNWSIYTWDIAANGPKIKELIKSHPVPADIKVYDESRQIISAEDY 258
           ++ +W+ W  Y  D   +   +  L  SHP+   I    E  QI  A  Y
Sbjct: 353 FYPEWKVWESYVTDNLQSALSLDALRSSHPIEVPIMHDYEINQIFDAISY 402


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 455 GRVLLISEKLTWPNSIALDTVNNKLYWGDARTHKIEVCNMDG 496
           G+  L +   TWPN+  LD +N   Y  + ++H I + N  G
Sbjct: 323 GKFALATLPQTWPNTSCLDLLN---YCQEGKSHMILISNSPG 361


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 683 EGLAIDWSGQNIYWTDTTT 701
           E + +DWS Q I WT+T+T
Sbjct: 126 EAVDLDWSPQGIPWTETST 144


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 354  GLAKTISKARLDGSDQSVVVRSSGVPDSIAIDPLSRKIYWTDPVMDTINVARLDGSYEKV 413
            G+   + K  L   D+  +      P S A+D L+  I +   V +T+    +DG+Y  +
Sbjct: 2099 GVEIFLLKEALTEIDKKQMSLLEPAPISSAVDTLASNISYIKYVFETMGKIEIDGNYMYI 2158

Query: 414  --IIHTELYDPRAIAL 427
               I   L+ PR + L
Sbjct: 2159 AHAIILALFSPRQLKL 2174


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 628 NDAVIPIKDLKEVSALALYVSGSKLYWSDSKTKTINRCSVNGSAVEKIVEWLGLVEGLAI 687
           ND  + + D  + + LA+ ++ S   WS +  K +       +     V W G    LA+
Sbjct: 124 NDFYLNLLDWGQSNVLAVGLASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQLAV 183

Query: 688 DWSGQNIYWTDTTTQRIEVSRLDGSSRR--AIIW 719
                 IY  D  + +  V  L G S R  A+ W
Sbjct: 184 GTDSGVIYIWDIESTK-SVRSLKGHSERVAALAW 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,549,156
Number of Sequences: 5004
Number of extensions: 237463
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 7
length of query: 1195
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1114
effective length of database: 1,957,154
effective search space: 2180269556
effective search space used: 2180269556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)