Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001048-TA|BGIBMGA001048-PA|IPR000033|Low-density
lipoprotein receptor, YWTD repeat, IPR006209|EGF-like, IPR002172|Low
density lipoprotein-receptor, class A, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR006210|EGF
(1195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0805 + 20705241-20705624,20706163-20706470,20706547-207066... 38 0.037
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 36 0.20
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 33 1.8
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 33 1.8
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 32 2.4
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889... 31 4.2
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 31 7.4
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 31 7.4
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448... 30 9.7
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 30 9.7
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 30 9.7
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 30 9.7
>10_08_0805 +
20705241-20705624,20706163-20706470,20706547-20706679,
20706776-20707060
Length = 369
Score = 38.3 bits (85), Expect = 0.037
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 137 MNGDPATRKV-IVRDNIFWPNGITVDYNNSLIYWVDAKLQFVDVIDFNGEKRKRVVK--G 193
M+ DP+TR+ ++ +++ NG+ V + + + + ++ NG+K V K G
Sbjct: 193 MSFDPSTRRTTVLARGLYFANGVAVSPDQDSLVFCETVMRRCSRYHINGDKAGTVDKFIG 252
Query: 194 GLV-YPFALTFSNDKLYWTDWQNWSIYTWDIAANGPKIKELI 234
L +P + + + YW WD+ P +++L+
Sbjct: 253 DLPGFPDNIRYDGEGRYWIAISAGRTLQWDVLTRSPFVRKLV 294
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 35.9 bits (79), Expect = 0.20
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 459 LISEKLTWPNSIALDTVNNKLYWGDARTHKIEVCNMDG 496
L++ L +P +A+D +NN+L+ D+ ++I V N++G
Sbjct: 566 LLASPLKFPGKLAIDVLNNRLFISDSNHNRIVVTNLEG 603
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 266 GCSHLCLLSPDPPGYNCACPTGVKLRENSSTTCYDSPQMLLVVAQRSTI 314
GC C+ +P GY C CP G C+ + VV +R I
Sbjct: 78 GCYGNCMNTPG--GYTCVCPPGTSGNPTEMNGCHSKDKFTFVVKKRKLI 124
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 894 PAHYRLNKDNITCSEPEEFLLFAQKNAVGRIMVANGECNDAY 935
PA +D+ P+E L+ Q GR + +N ECN+A+
Sbjct: 787 PADKSTGRDSFISYPPKEHLVSKQATYQGRYLASNNECNNAF 828
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 260 CKKNNAGCSHLCLLSPDPPGYNCACPTGVKLRENSSTTCYDSPQM 304
C N GC + S P G+NC+CP G + + N S P +
Sbjct: 312 CAPGNDGCPDGMICSNFPGGHNCSCPEG-EHKSNKSGVLICEPDL 355
>06_01_1086 +
8890806-8890865,8890970-8891055,8891366-8891440,
8892780-8892921,8893304-8893490,8893944-8894425,
8894595-8894975,8895056-8895100,8896486-8896639,
8897750-8897895,8898016-8898099
Length = 613
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 647 VSGSKLYWSDSKTKTINRCSVNGSAVEKIVEWLGLVEGLAIDWSGQNIYW 696
V SK W + TK RC+ + + +W GL G+ D + Q + W
Sbjct: 95 VDASKHKWVSNPTKACPRCNHIIDNSDVVHQWPGLPRGVKFDPTDQELLW 144
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 30.7 bits (66), Expect = 7.4
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 619 GRLSIKNEYNDAVIPIKDLKEVSAL--ALYVSGSKLYWSDSKTKTINRCSVNGSAVEKIV 676
G LS++++ D V+ I + +S + S S + SDS +IN SA++
Sbjct: 158 GLLSLESDSTDDVVDIDNELVISPTFSSCNASESSINKSDSGNSSINGTPPLVSAMKGSR 217
Query: 677 EWLGLVEGLAIDWSGQNIYWTDTTTQRIEVSRLDGSSRRA 716
LG+V L++ W+ ++Y T+ V SSR++
Sbjct: 218 AKLGIVTSLSVSWA-PDVYDPPVTSGSHTVKGHQRSSRKS 256
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 30.7 bits (66), Expect = 7.4
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 48 NETYTGEKFKIVSEGLVTP--TGIAIDWYT----DKLYWTDGETNKIEVISIVQKYRKVL 101
N T E F+ VSE + WYT D++ +T+ E+N +++S Q+Y+
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
Query: 102 FWSEVDLARAIAVVPED 118
E D VPED
Sbjct: 430 ADEEGDYEDEEEQVPED 446
>05_07_0027 +
27140626-27141457,27143101-27143901,27144838-27144873,
27145133-27145420,27145836-27146289,27146520-27146964
Length = 951
Score = 30.3 bits (65), Expect = 9.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 563 LGWNPCADDNGGCSHLCFNR--PDDYICGCPLG 593
LGW C+D H FN PD Y C CP G
Sbjct: 505 LGW--CSDCKASGGHCGFNGSFPDQYTCYCPYG 535
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 30.3 bits (65), Expect = 9.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 258 YPCKKNNAGCSHLCLLSPDPPGYNCACPTG 287
YPC NN+ +CL S + PGY C C G
Sbjct: 245 YPCISNNS----ICLDSQNGPGYICNCRKG 270
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 30.3 bits (65), Expect = 9.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 257 DYPCKKNNAGCSHLCLLSPDPPGYNCACPTGVKLRENSSTTCYD 300
DY C+ N SH C+ S D PGY C C G + C D
Sbjct: 274 DYACRSVN---SH-CIDSIDGPGYRCNCSQGYEGNPYLDGGCQD 313
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 30.3 bits (65), Expect = 9.7
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 566 NPCADDNGGCSH--LCFNRPDDYICGCPLGLELTADKKTCVEPEAFLV 611
N C + C C N Y C CP+G +L + TC P+ L+
Sbjct: 1413 NECEQNQSPCPKGATCRNTEGWYHCSCPVGRKLAKETNTC-NPDISLI 1459
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,634,694
Number of Sequences: 37544
Number of extensions: 1597678
Number of successful extensions: 3114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3090
Number of HSP's gapped (non-prelim): 30
length of query: 1195
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1105
effective length of database: 11,414,388
effective search space: 12612898740
effective search space used: 12612898740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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