GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001048-TA|BGIBMGA001048-PA|IPR000033|Low-density
lipoprotein receptor, YWTD repeat, IPR006209|EGF-like, IPR002172|Low
density lipoprotein-receptor, class A, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR006210|EGF
         (1195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    48   3e-07
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    48   5e-07
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    27   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   4.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   4.9  

>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 48.4 bits (110), Expect = 3e-07
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 847 LDYISDLKLYHRAKSM-GSNQCGVDNGGCSHLCLPTP--GDVRTDYRCACPAHYRLNKDN 903
           L Y   + +YH  +   G NQC   NG CSHLCLP P          CACP   +L  D 
Sbjct: 15  LKYPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDG 74

Query: 904 ITCSEPE 910
           + C E +
Sbjct: 75  LMCVEKD 81



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 562 PLGWNPCADDNGGCSHLCFNRP------DDYICGCPLGLELTADKKTCVEPEA 608
           P G N C   NG CSHLC   P          C CP GL+L +D   CVE ++
Sbjct: 30  PDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKDS 82



 Score = 37.5 bits (83), Expect = 6e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 240 PADIKVYDESRQIISAEDYPCKKNNAGCSHLCLLSP----DPPGYNCACPTGVKL 290
           P  + VY   RQ        C+  N  CSHLCL +P      P  +CACP G+KL
Sbjct: 18  PMVVHVYHPYRQPDGMNQ--CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKL 70


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 48.0 bits (109), Expect = 5e-07
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 847 LDYISDLKLYHRAKSM-GSNQCGVDNGGCSHLCLPTP--GDVRTDYRCACPAHYRLNKDN 903
           L Y   + +YH  +   G NQC   NG CSHLCLP P          CACP   +L  D 
Sbjct: 15  LKYPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDG 74

Query: 904 ITCSE 908
           + C E
Sbjct: 75  LMCVE 79



 Score = 40.3 bits (90), Expect = 9e-05
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 562 PLGWNPCADDNGGCSHLCFNRP------DDYICGCPLGLELTADKKTCVE 605
           P G N C   NG CSHLC   P          C CP GL+L +D   CVE
Sbjct: 30  PDGMNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVE 79



 Score = 37.5 bits (83), Expect = 6e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 240 PADIKVYDESRQIISAEDYPCKKNNAGCSHLCLLSP----DPPGYNCACPTGVKL 290
           P  + VY   RQ        C+  N  CSHLCL +P      P  +CACP G+KL
Sbjct: 18  PMVVHVYHPYRQPDGMNQ--CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKL 70


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 470 IALDTVNNKLYWGDARTHKIEVCNMDGTERKELHSNDI 507
           +AL  V N LY+    +H +   NM+   + +   N+I
Sbjct: 257 MALSPVTNNLYYSPLTSHSLYYVNMEPFMKSQYEENNI 294


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 560 GAPLGWNPCADDNGGCSHLCFNRPDDYICGCPLG 593
           G P     C         LC+ + +D IC  P+G
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDEDVICSTPIG 173


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 560 GAPLGWNPCADDNGGCSHLCFNRPDDYICGCPLG 593
           G P     C         LC+ + +D IC  P+G
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIG 226


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 8/30 (26%)

Query: 193 GGLVYPFALT--------FSNDKLYWTDWQ 214
           G  +YP ++T        F+N KLYW  WQ
Sbjct: 546 GNWIYPASMTIPGSNSAVFTNYKLYWRYWQ 575


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,531
Number of Sequences: 429
Number of extensions: 14622
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 10
length of query: 1195
length of database: 140,377
effective HSP length: 65
effective length of query: 1130
effective length of database: 112,492
effective search space: 127115960
effective search space used: 127115960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)