GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001048-TA|BGIBMGA001048-PA|IPR000033|Low-density
lipoprotein receptor, YWTD repeat, IPR006209|EGF-like, IPR002172|Low
density lipoprotein-receptor, class A, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR006210|EGF
         (1195 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51440.1 68416.m05634 strictosidine synthase family protein s...    36   0.16 
At5g03100.1 68418.m00258 F-box family protein contains F-box dom...    35   0.28 
At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)...    35   0.28 
At3g51450.1 68416.m05635 strictosidine synthase family protein s...    35   0.38 
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa...    34   0.50 
At2g35780.1 68415.m04390 serine carboxypeptidase S10 family prot...    32   2.0  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    31   4.6  
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    30   8.1  

>At3g51440.1 68416.m05634 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 371

 Score = 35.9 bits (79), Expect = 0.16
 Identities = 19/99 (19%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 137 MNGDPATR--KVIVRDNIFWPNGITVDYNNSLIYWVDAKLQFVDVIDFNGEKRKRVVKGG 194
           M+ DP T+  +V++RD +++ NG+++  + + + + +  ++       NG + +  ++G 
Sbjct: 199 MSFDPTTKVTRVLLRD-LYFANGVSLSPDQTHLVFCETPIRRCSKYYINGGRVELFIQGL 257

Query: 195 LVYPFALTFSNDKLYWTDWQNWSIYTWDIAANGPKIKEL 233
             YP  + +  D  YW    +     W ++   P ++++
Sbjct: 258 PGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKI 296


>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 307

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 610 LVYSRK--NIIGRLSIKNEYNDAVIPIKDLKEVSALALY-VSGSK--LYWSDSKTKTINR 664
           L  SRK  N+  R +    + D       LK++S   +Y +   K  + WS  +  ++NR
Sbjct: 97  LALSRKAENVSLRFTSHYRFRDTFFINSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNR 156

Query: 665 CSVNGSAVEKIVEWLGLVEGLAID 688
           C V+  ++ KI+    L+E L ++
Sbjct: 157 CKVSDDSIAKILTGCSLLESLTLN 180


>At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088; identical to cDNA
           YLS2 mRNA for strictosidine synthase-like protein
           GI:13122281
          Length = 371

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 19/99 (19%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 137 MNGDPATR--KVIVRDNIFWPNGITVDYNNSLIYWVDAKLQFVDVIDFNGEKRKRVVKGG 194
           M+ DP TR  +V+++D +++ NG+++  + + + + +  ++       N E+ +  ++G 
Sbjct: 199 MSFDPTTRVTRVLLKD-LYFANGVSMSPDQTHLIFCETPMRRCSKYYINEERVEVFIQGL 257

Query: 195 LVYPFALTFSNDKLYWTDWQNWSIYTWDIAANGPKIKEL 233
             YP  + +  D  YW    + +   W ++   P ++++
Sbjct: 258 PGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKI 296


>At3g51450.1 68416.m05635 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]
          Length = 371

 Score = 34.7 bits (76), Expect = 0.38
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 140 DPATR--KVIVRDNIFWPNGITVDYNNSLIYWVDAKLQFVDVIDFNGEKRKRVVKGGLV- 196
           DP TR  KV+++D +++ NGIT+  + + + + +  ++      +  E+R  V    L  
Sbjct: 202 DPTTRVTKVLLKD-LYFANGITISPDQTHLIFCETPMKRCSKY-YISEERVEVFTQSLPG 259

Query: 197 YPFALTFSNDKLYWTDWQNWSIYTWDIAANGPKIKEL 233
           YP  + +  D  YW    +     W+I+   P +++L
Sbjct: 260 YPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKL 296


>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1055

 Score = 34.3 bits (75), Expect = 0.50
 Identities = 13/38 (34%), Positives = 26/38 (68%)

Query: 459 LISEKLTWPNSIALDTVNNKLYWGDARTHKIEVCNMDG 496
           L +  L +P  +A+DT+NN+L+  D+  ++I V +++G
Sbjct: 561 LATSPLKFPGKLAIDTLNNRLFISDSNHNRIIVTDLEG 598


>At2g35780.1 68415.m04390 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 452

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 923 RIMVANGECNDAYIPLTGLK-NVRAIEYDPVEKQLYWMDD 961
           RI V +G+  D+ +P+TG + ++RA++  P+ K   W DD
Sbjct: 366 RIWVFSGD-TDSVVPITGTRYSIRALKLQPLSKWYPWNDD 404


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 568 CADDNGGCSH--LCFNRPDDYICGCPLGLELTADKKTCVEPE 607
           C  D   CS    C NR   + C CP G +L +   +C  PE
Sbjct: 297 CISDTHNCSDPKTCRNRDGGFDCKCPSGYDLNS-SMSCTRPE 337


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 600 KKTCVEPEAFLVYSRKNIIGRLSIKNEYNDAVIPIKDLKEVSALALYVSGSKLYWSDSKT 659
           ++  V+  A L  S +N  G+L +  +    V+   +L+E+  L++    S    S  + 
Sbjct: 297 RRVPVDLVAVLDVSGRNSGGKLEMLKQTMRIVL--SNLREMDRLSIIAFSS----SSKRL 350

Query: 660 KTINRCSVNGS-AVEKIVEWL---GLVEGLAIDWSGQNIYWTDTTTQRIEV 706
             + R + NG  +  +IV+ +   G V G+ ID+SG+ +   D   + ++V
Sbjct: 351 SPLRRMTANGRRSARRIVDIITVPGSVSGVGIDFSGEGMSVNDALKKAVKV 401


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,354,550
Number of Sequences: 28952
Number of extensions: 1283115
Number of successful extensions: 2461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2453
Number of HSP's gapped (non-prelim): 15
length of query: 1195
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1106
effective length of database: 9,493,832
effective search space: 10500178192
effective search space used: 10500178192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)