Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 22  RRNITWPVKHKACI 35
           R  ++WPVK +A +
Sbjct: 100 REQMSWPVKKEAVV 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 14  DRWRYSYRRRNITWPVKHKACIMEWIMKLPVSLFKSIRIGSF 55
           + ++Y+Y   N     K     + +I ++PV +   I  G+F
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYCGNF 135


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 49  SIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRIL 87
           S+   +  +N+  F+K +Y+    L  +   D + + I+
Sbjct: 333 SVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLII 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,146
Number of Sequences: 429
Number of extensions: 1036
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 103
length of database: 140,377
effective HSP length: 49
effective length of query: 54
effective length of database: 119,356
effective search space:  6445224
effective search space used:  6445224
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (21.3 bits)
S2: 38 (19.4 bits)