Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24600.1 68416.m03090 hypothetical protein                          26   4.2  
At2g25660.1 68415.m03075 expressed protein                             26   4.2  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    26   5.5  
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass...    26   5.5  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    26   5.5  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    26   5.5  
At1g69070.1 68414.m07903 expressed protein                             25   7.3  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    25   7.3  
At2g45210.1 68415.m05629 auxin-responsive protein-related weakly...    25   9.6  

>At3g24600.1 68416.m03090 hypothetical protein
          Length = 506

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 13  GDRWRYSYRRRNITWPVK 30
           G RW+ S RR N+ WP K
Sbjct: 277 GFRWKGSSRRSNMYWPEK 294


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 3    LDPLMFVRLFGDRWRYSYRRRNITWPVK 30
            LDPL+ + L G  W++  + R   W  K
Sbjct: 1962 LDPLLDLALVGSEWQFRVQSRASNWQDK 1989


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 26   TWPVKHKACIMEWIMKLPVSLFKSIR--IGSFIVNLFGFVK 64
            TW V+     ++ ++ L V  F+S+R  + S +  + GF+K
Sbjct: 1366 TWDVETSTLALQLLVDLLVKFFRSVRSQLPSVVSIIVGFIK 1406


>At3g58460.1 68416.m06516 rhomboid family protein /
           ubiquitin-associated (UBA)/TS-N domain-containing
           protein contains Pfam profiles PF01694: Rhomboid family,
           PF00627: UBA/TS-N domain
          Length = 403

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 50  IRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFY 93
           + +GS +  + G V++ YL V+      +   ++  +   NPFY
Sbjct: 88  VPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFY 131


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 17  RYSYRRRNITWPVKHKACIMEWIMKLPVSLF 47
           R SY   N+ +P+ +K+C   W  K+  SLF
Sbjct: 422 RQSYHNVNVIYPIGYKSC---WHDKITGSLF 449


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 3   LDPLMFVRLFGDRWRYSYRRRNITWPVKHKACIMEWIMKLPVSLFKSIRIGSFIVNLFGF 62
           + PL+   L GD    +   +N+ +  K   C MEW+ K   S    I  GS +  L   
Sbjct: 228 IGPLVSPFLLGDGEEETLDGKNLDF-CKSDDCCMEWLDKQARSSVVYISFGSMLETLENQ 286

Query: 63  VKMRYLFVIALNNIGLRDFVLIR 85
           V+       AL N GL    +IR
Sbjct: 287 VE---TIAKALKNRGLPFLWVIR 306


>At1g69070.1 68414.m07903 expressed protein
          Length = 901

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 37  EWIMKLPVSLFKSIRIGSFIVNL 59
           E++M+ P+S  + I IGSF+ ++
Sbjct: 615 EYLMRCPISSGRDIAIGSFLCSI 637


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 9   VRLFGDRWRYSYRRRNITWPVKHKACIMEWIMKLPVSLFKSI 50
           +RLF D  R   R    TW +   AC       L  SL K I
Sbjct: 249 LRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLI 290


>At2g45210.1 68415.m05629 auxin-responsive protein-related weakly
          similar to small auxin up RNA (GI:546362) {Arabidopsis
          thaliana}
          Length = 162

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 1  MLLDPLMFVRLFGDRWRYSYRRRNIT----WPVKHK 32
          ML+ PL  ++ +G R + S+RRR+       PV HK
Sbjct: 39 MLMRPLAKLKSWGQRLKQSFRRRSTRRSAYIPVDHK 74


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,792
Number of Sequences: 28952
Number of extensions: 79757
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 12,070,560
effective HSP length: 70
effective length of query: 33
effective length of database: 10,043,920
effective search space: 331449360
effective search space used: 331449360
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 52 (25.0 bits)