GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P95784 Cluster: ATP synthase a chain; n=59; Streptococc...    35   0.28 
UniRef50_Q9HKU1 Cluster: Conserved hypothetical membrane protein...    33   1.1  
UniRef50_Q73NU7 Cluster: MATE efflux family protein; n=1; Trepon...    33   1.5  
UniRef50_A0FWW1 Cluster: Acyltransferase 3; n=1; Burkholderia ph...    32   1.9  
UniRef50_A7DIN2 Cluster: Acyltransferase 3; n=2; Methylobacteriu...    32   2.6  
UniRef50_A1DD85 Cluster: Integral membrane protein; n=7; Trichoc...    32   2.6  
UniRef50_A5FAG1 Cluster: Acyltransferase 3; n=1; Flavobacterium ...    31   3.4  
UniRef50_Q4Y2Q6 Cluster: Putative uncharacterized protein; n=1; ...    31   4.5  
UniRef50_Q8EWX7 Cluster: 1-deoxy-D-xylulose-5-phosphate synthase...    31   4.5  
UniRef50_A0X3D4 Cluster: Putative uncharacterized protein; n=1; ...    30   7.9  

>UniRef50_P95784 Cluster: ATP synthase a chain; n=59;
           Streptococcus|Rep: ATP synthase a chain - Streptococcus
           mutans
          Length = 239

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 35  IMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFYP 94
           ++EWI    + + K   +GS+  N   F    +LFV   NNIGL   + ++   +    P
Sbjct: 52  VLEWIYDFVLGIIKP-NLGSYTKNYSLFAFCLFLFVFVANNIGLLTKIQVKDYNLWT-SP 109

Query: 95  TASFA 99
           TA+FA
Sbjct: 110 TANFA 114


>UniRef50_Q9HKU1 Cluster: Conserved hypothetical membrane protein;
           n=3; Thermoplasma|Rep: Conserved hypothetical membrane
           protein - Thermoplasma acidophilum
          Length = 600

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 36  MEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRD 80
           + W+    + LF S+    F+VN+  F+ +  L +IAL  I LRD
Sbjct: 427 LSWVFTFVLILFMSLGGTGFLVNITDFMVLIALSIIALTAIALRD 471


>UniRef50_Q73NU7 Cluster: MATE efflux family protein; n=1; Treponema
           denticola|Rep: MATE efflux family protein - Treponema
           denticola
          Length = 449

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 39  IMKLPVSLFKSIRIGSFIV--NLFGFVKMRYLFVIALNNIGL 78
           ++KLP++LF  +  G+ I+   LFG  K++ LF     +IGL
Sbjct: 60  LLKLPINLFSGLSAGATIIISQLFGAKKIKELFTAIHTSIGL 101


>UniRef50_A0FWW1 Cluster: Acyltransferase 3; n=1; Burkholderia
          phymatum STM815|Rep: Acyltransferase 3 - Burkholderia
          phymatum STM815
          Length = 351

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 53 GSFIVNLFGFVKMRYLFVIAL--NNIGLRDFVLIRILRINPFY 93
          G F V++F FV   ++  +AL  + + +RDFV+ R++RI P Y
Sbjct: 32 GQFRVDVF-FVLSGFVIALALEASTVSVRDFVVSRVVRIVPLY 73


>UniRef50_A7DIN2 Cluster: Acyltransferase 3; n=2; Methylobacterium
           extorquens PA1|Rep: Acyltransferase 3 - Methylobacterium
           extorquens PA1
          Length = 360

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 43  PVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFYPTASFA 99
           P++      +G + VN F F    +L  ++ +  G RD+V+ R LRI P    A+ A
Sbjct: 48  PLARSTGFSLGEYAVNGF-FAVSGFLVTMSYDRRGWRDYVIARSLRIGPGLVAATLA 103


>UniRef50_A1DD85 Cluster: Integral membrane protein; n=7;
           Trichocomaceae|Rep: Integral membrane protein -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 356

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/68 (22%), Positives = 34/68 (50%)

Query: 31  HKACIMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRIN 90
           +K C +  ++  P++LF  I + S I+ +F   + + +F+  L       +++  I++I 
Sbjct: 73  YKFCYIATVLYCPMALFVKIALLSIIIRIFAPYRSKIIFIYVLLGCLCIYYIIAEIVKIR 132

Query: 91  PFYPTASF 98
              P  S+
Sbjct: 133 MCDPIPSY 140


>UniRef50_A5FAG1 Cluster: Acyltransferase 3; n=1; Flavobacterium
          johnsoniae UW101|Rep: Acyltransferase 3 -
          Flavobacterium johnsoniae UW101
          Length = 370

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 36 MEWIMKLPVSLF--KSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFY 93
          MEWI   P   F         F   L GFV + Y +   +  +GLR+F + RI+R++P  
Sbjct: 37 MEWIFTDPSKNFIGHGFLAVDFFFCLSGFV-IGYAYDDRIAKMGLRNFFISRIIRLHPLV 95

Query: 94 PTAS 97
             S
Sbjct: 96 AAGS 99


>UniRef50_Q4Y2Q6 Cluster: Putative uncharacterized protein; n=1;
          Plasmodium chabaudi|Rep: Putative uncharacterized
          protein - Plasmodium chabaudi
          Length = 101

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 31 HKACIMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVL-IRILRI 89
          HK C+  W+ KL + L+  I +  F + L       ++F + ++N  +  ++  I + R 
Sbjct: 34 HKPCLFHWVYKLIIVLYAQIIVSLFFILLH---VCSFIFFMVIHNFLIYFYLFHISMFRN 90

Query: 90 NPFY 93
           P Y
Sbjct: 91 KPIY 94


>UniRef50_Q8EWX7 Cluster: 1-deoxy-D-xylulose-5-phosphate synthase;
           n=1; Mycoplasma penetrans|Rep:
           1-deoxy-D-xylulose-5-phosphate synthase - Mycoplasma
           penetrans
          Length = 612

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 37  EWIMKLPVSLFKSI-RIGSFIV--NLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFY 93
           EW  K+  S++KS  ++  F    N F  +   Y  VI  NN+     VL RI  I PF 
Sbjct: 215 EWSKKIYWSIYKSFSKLSKFFKGKNFFESLGFHYFGVIDGNNLKKTINVLKRIKNIVPFG 274

Query: 94  PT 95
           PT
Sbjct: 275 PT 276


>UniRef50_A0X3D4 Cluster: Putative uncharacterized protein; n=1;
           Shewanella pealeana ATCC 700345|Rep: Putative
           uncharacterized protein - Shewanella pealeana ATCC
           700345
          Length = 178

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 11  LFGDRWRYSYRRRNITWPVKHKACIMEW 38
           + G R  + + RR+  W +KH++ + +W
Sbjct: 117 ILGGRHHFRFERRDGIWKIKHRSTVFDW 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,359,963
Number of Sequences: 1657284
Number of extensions: 3643914
Number of successful extensions: 11353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11350
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 575,637,011
effective HSP length: 80
effective length of query: 23
effective length of database: 443,054,291
effective search space: 10190248693
effective search space used: 10190248693
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 65 (30.3 bits)