GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   0.45 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   1.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    24   5.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    23   7.3  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 29  VKHKACIMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFV 70
           +K    +++WI+   +SLF  IR      +L  F K+ Y  +
Sbjct: 105 IKSSVTLLDWILPRTISLFADIRFIKLFDSLKEFHKLIYQLI 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 2   LLDPLMFVRLFGD-RWRYSYRRRNITWPVKHKACIMEWIMKLPVSLFKSIRIGSFIVNLF 60
           LLD  +    F D R   SY    I+W +K+      +I  LP+  F S+++  FI  +F
Sbjct: 318 LLDEHIRSNKFEDTRDLISYIESPISWNLKY------FISALPLPCFLSVQLRWFITYIF 371

Query: 61  GFVKMRYLFVIALNNI-GLRDFVLIRILR 88
                  LF+   + I G+   VL+  +R
Sbjct: 372 HPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20  YRRRNITWPVKHKACIMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLR 79
           Y    +TWP+        +   L V    +  +   +++L  F  +  +F +A  N+G  
Sbjct: 542 YESSALTWPLLLGPLRFFYEQHLQVFFMGNPFVWYSVISLVAFFVIVQIFCLARWNLGYN 601

Query: 80  DF 81
           DF
Sbjct: 602 DF 603


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
          Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)

Query: 55 FIVNLFGFVKMRYLFVIALNNI 76
          +++  FGF+ + Y+++I+L  I
Sbjct: 12 WVIPTFGFLAIHYIYIISLTII 33


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,276
Number of Sequences: 5004
Number of extensions: 16658
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 2,362,478
effective HSP length: 63
effective length of query: 40
effective length of database: 2,047,226
effective search space: 81889040
effective search space used: 81889040
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 47 (23.0 bits)