GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1340 + 25887135-25887372,25887676-25887798,25888388-258885...    28   1.6  
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211...    26   6.4  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    26   6.4  
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821...    25   8.5  

>07_03_1340 +
           25887135-25887372,25887676-25887798,25888388-25888527,
           25888680-25888817,25888898-25889119
          Length = 286

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 11  LFGDRWRYSYRRRNITWPVKHKACIMEWIMK 41
           L  D+ R SY R +   P+K     MEW+MK
Sbjct: 148 LIDDQRRKSYDREHHVNPMKASQAWMEWVMK 178


>06_03_1114 +
           27719099-27719252,27719340-27719570,27720508-27721148,
           27721225-27722124
          Length = 641

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 58  NLFGFVKMRYLFVIALNNIGLRDFVLIR 85
           NLFGF++ R      L + G R FVL R
Sbjct: 252 NLFGFLEARATHDALLRDTGRRPFVLSR 279


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 58  NLFGFVKMRYLFVIALNNIGLRDFVLIR 85
           NLFGF++ R      L + G R FVL R
Sbjct: 576 NLFGFLEARATHDALLRDTGRRPFVLSR 603


>05_04_0281 +
           19779156-19779805,19781303-19781475,19781909-19782162,
           19782265-19782339,19782431-19782538,19782914-19783031,
           19783347-19783482,19785623-19785797,19786333-19786860,
           19787624-19787836,19787850-19787882
          Length = 820

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 27  WPVKHKACIMEWIMKLPVSLFKSIRIGSFIVNLF 60
           +P + +  I EW+  +PV L   IR G  I+ +F
Sbjct: 377 FPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVF 410


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,491
Number of Sequences: 37544
Number of extensions: 89314
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 14,793,348
effective HSP length: 71
effective length of query: 32
effective length of database: 12,127,724
effective search space: 388087168
effective search space used: 388087168
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 53 (25.4 bits)