GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37697| Best HMM Match : Methyltransf_8 (HMM E-Value=4.7e-18)        27   2.1  
SB_15629| Best HMM Match : S_locus_glycop (HMM E-Value=3.4)            27   2.1  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_37697| Best HMM Match : Methyltransf_8 (HMM E-Value=4.7e-18)
          Length = 311

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 14  DRWRYSYRRRNITWPVKHKACIMEWIMKLPVSL 46
           D +   +R +   WPV     I++W+++ PVSL
Sbjct: 238 DVYHRGFRTQVEHWPVNPVNVIIQWLLERPVSL 270


>SB_15629| Best HMM Match : S_locus_glycop (HMM E-Value=3.4)
          Length = 240

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 16  WRYSYRRRNITWPVKHKACIMEWIMKL 42
           W+ + R R ITW +  ++C   W + L
Sbjct: 164 WKLTLRSRTITWKLTLRSCTNTWKLTL 190


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 16  WRYSYRRRNITWPVKHKACIMEWIMKLPV 44
           W+ S R   I W ++ ++C + W  KLPV
Sbjct: 401 WKLSLRSCTIIWKLRLRSCAIIW--KLPV 427



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 16  WRYSYRRRNITWPVKHKACIMEWIMKLPV 44
           W+ S R   I W +  ++C + W  KLPV
Sbjct: 368 WKLSLRSCTIIWKLPVRSCTIIW--KLPV 394


>SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 31  HKACIMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRIN 90
           HKA     + + P +        S IVN+    K + + +  L ++G    +  RI+ I+
Sbjct: 289 HKATATSTLAEYPDNTIAHRTFYSCIVNMMQAYKFKQILITFLLSVGTNALIWPRIIYIH 348

Query: 91  PFYPTA 96
            FY  A
Sbjct: 349 -FYQMA 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,067
Number of Sequences: 59808
Number of extensions: 108584
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 11
length of query: 103
length of database: 16,821,457
effective HSP length: 72
effective length of query: 31
effective length of database: 12,515,281
effective search space: 387973711
effective search space used: 387973711
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 53 (25.4 bits)