GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001047-TA|BGIBMGA001047-PA|undefined
         (103 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine r...    27   1.8  
Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    26   4.3  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    26   4.3  
AC006607-1|AAY44022.1|  208|Caenorhabditis elegans Hypothetical ...    25   7.5  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    25   9.9  

>AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 6 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 35  IMEWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIR 85
           I  +I + P S FK+I    FI+ L G     Y     L     R  V+IR
Sbjct: 240 ISNYIAQFPFSSFKNIGPYVFIIKLIGSAVESYFIFKILQRRSARSSVVIR 290


>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 13  GDRWRYSYRRRN-ITWPVKHKACIMEWIMKLP 43
           GD+W  S    N +  P +  +C  EW+++LP
Sbjct: 107 GDKWNSSIEWINRVACPEEDLSCSDEWLVRLP 138


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 13  GDRWRYSYRRRN-ITWPVKHKACIMEWIMKLP 43
           GD+W  S    N +  P +  +C  EW+++LP
Sbjct: 107 GDKWNSSIEWINRVACPEEDLSCSDEWLVRLP 138


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 2   LLDPLMFVRLFGDRWRYS-YRRRN 24
           +LD ++F++  GD+W    +RRRN
Sbjct: 638 MLDLMLFLKTLGDKWEEEVHRRRN 661


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 30  KHKAC-IMEWIMKLPVSLFKS-IRIGSFI 56
           KHK   I+E+++K+P  LFKS +R   FI
Sbjct: 257 KHKVPKIIEYVLKIPTLLFKSELRFPHFI 285


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 42  LPVSLFKSIRIGSFIVNLFGFVKMRYLFVIALNNIGLRDFVLIRILRINPFYPTASFA 99
           L   L  ++ I S I  +F ++ +  LF+  +  IGL  +V I +  ++ + P   FA
Sbjct: 240 LQKQLMIALIIQSVIPIIFMYIPILLLFITPMFKIGLGPYVNIAMATLSIYPPIDQFA 297


>AC006607-1|AAY44022.1|  208|Caenorhabditis elegans Hypothetical
           protein C09E7.10 protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 2   LLDPLMFVRLFGDRWRYSYRRRNITW 27
           L+DP  F+ L  + WR ++  R I W
Sbjct: 79  LIDPSTFITLKENDWRDAHEGRMIIW 104


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 37  EWIMKLPVSLFKSIRIGSFIVNLFGFVKMRYLFVIAL 73
           E+  KL   LFK++ + +FI   F F+ +  +F+  L
Sbjct: 239 EYTYKLQSQLFKALVVQAFIPITFLFIPIGLVFIAPL 275


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.338    0.150    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,854
Number of Sequences: 27539
Number of extensions: 82087
Number of successful extensions: 308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 8
length of query: 103
length of database: 12,573,161
effective HSP length: 71
effective length of query: 32
effective length of database: 10,617,892
effective search space: 339772544
effective search space used: 339772544
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 52 (25.0 bits)