Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   0.75 
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    25   2.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   4.0  
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   4.0  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    23   9.2  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 15  YKPQIAAIKQN-AYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLV 60
           Y P +  + +N A+G      GV SSE + F+  + +R   H  G V
Sbjct: 505 YAPDVQQMYRNIAFGKVRFPKGVLSSEGRSFVRGLLNRNPNHRLGAV 551


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 15  YKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAAS 74
           +K +I AI  N     +  TG W    K ++  + + ++  + G   R+       ++ +
Sbjct: 102 HKAEIVAIDTNTVDRRIVVTGSWDGTIKLWLGNLPNSVQTLNNGSNSRILTVATHYSSPN 161

Query: 75  VMG 77
           ++G
Sbjct: 162 LLG 164


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 24  QNAYGMAVETTGVWSS-EAKKFIAAIGHRLRRHDPGLV 60
           +N  G+  +  G+  + +   F++ + H LR+H P LV
Sbjct: 392 KNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLV 429


>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 250

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 27  YGMAVETTGVWSSEAKKFIAAIGHRLR 53
           YG+A  T G +SS  K  + A+G+  R
Sbjct: 191 YGLARVTNGSFSSSQKADVLALGNGTR 217


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 16  KPQIAAIKQNAYGMAVETTGVWSSEAK 42
           K    A   +  G AV TTG+W  + +
Sbjct: 343 KASSVATSMSQMGAAVPTTGLWKRQPR 369


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,126
Number of Sequences: 5004
Number of extensions: 10662
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)