GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q01HD7 Cluster: OSIGBa0157K09-H0214G12.20 protein; n=8;...    32   1.9  
UniRef50_Q3JH32 Cluster: Putative uncharacterized protein; n=1; ...    31   3.4  
UniRef50_Q3JET7 Cluster: CheA signal transduction histidine kina...    31   4.5  
UniRef50_A1WFP8 Cluster: ABC transporter related; n=2; cellular ...    31   4.5  
UniRef50_Q74QM5 Cluster: Rhs family protein; n=7; Yersinia|Rep: ...    31   5.9  
UniRef50_Q2IHA5 Cluster: Putative uncharacterized protein; n=1; ...    31   5.9  
UniRef50_Q0V559 Cluster: Putative uncharacterized protein; n=1; ...    31   5.9  
UniRef50_A0VH00 Cluster: Putative uncharacterized protein; n=2; ...    30   7.9  
UniRef50_Q10QY7 Cluster: Hydrolase, alpha/beta fold family prote...    30   7.9  
UniRef50_Q9YBC8 Cluster: Dihydrolipoyl dehydrogenase; n=2; Desul...    30   7.9  

>UniRef50_Q01HD7 Cluster: OSIGBa0157K09-H0214G12.20 protein; n=8;
           Oryza sativa|Rep: OSIGBa0157K09-H0214G12.20 protein -
           Oryza sativa (Rice)
          Length = 567

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 4   EPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRL 63
           E  E  NV AS K ++    + A   A  + G   S+A+KF + +GHR +   P ++  L
Sbjct: 69  ERDEAINVAASLKEKVV---KEASDAATTSGGQAPSKARKFSSVLGHRRKTETPSVIFTL 125

Query: 64  S 64
           S
Sbjct: 126 S 126


>UniRef50_Q3JH32 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia pseudomallei 1710b|Rep: Putative
           uncharacterized protein - Burkholderia pseudomallei
           (strain 1710b)
          Length = 814

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 40  EAKKFIAAIGHRLRRHDPGLVQRLSIAI 67
           + ++ IAAI HR+R  +PGLVQ   +A+
Sbjct: 571 QGRRRIAAIEHRIRFREPGLVQHAPVAM 598


>UniRef50_Q3JET7 Cluster: CheA signal transduction histidine kinase;
           n=1; Nitrosococcus oceani ATCC 19707|Rep: CheA signal
           transduction histidine kinase - Nitrosococcus oceani
           (strain ATCC 19707 / NCIMB 11848)
          Length = 1758

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQ 68
           A   P +A+ + ++   AVE    +S  AK   ++ G +  +HDP L Q   +A Q
Sbjct: 752 ADNTPNLASSEVDSTLQAVEVEDSYSPPAKNSESSTGEKNSKHDPELTQEAQLAEQ 807


>UniRef50_A1WFP8 Cluster: ABC transporter related; n=2; cellular
          organisms|Rep: ABC transporter related -
          Verminephrobacter eiseniae (strain EF01-2)
          Length = 412

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 36 VWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPG 82
          +++S  ++F A  G R R H    ++ +S  ++RG    V+G  G G
Sbjct: 32 LYASPRERFKALFGSRARHHSHWALRDVSFELRRGQCLGVVGDNGAG 78


>UniRef50_Q74QM5 Cluster: Rhs family protein; n=7; Yersinia|Rep: Rhs
           family protein - Yersinia pestis
          Length = 1438

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 22  IKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQR 69
           +K+NA G  +E    W    +    A+GH    HDP L Q L++   +
Sbjct: 834 LKRNAEGRLIEEVDYWGQSRRYQYNAVGHLTGSHDP-LGQILAVTCDK 880


>UniRef50_Q2IHA5 Cluster: Putative uncharacterized protein; n=1;
           Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
           uncharacterized protein - Anaeromyxobacter dehalogenans
           (strain 2CP-C)
          Length = 359

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 21  AIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMG 77
           A+   A+G+AV++   W S  ++ +A +     R  PG  + +   +QRG  A V+G
Sbjct: 178 AVISYAFGVAVQSLFNWLS-GQQMVAVMEQLAGRMPPGQAEIIRNFVQRGTGAIVLG 233


>UniRef50_Q0V559 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 224

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 29  MAVETTGVWSSEAKKFIAAIGHRLRRH 55
           M  + TGVW+SE  K IAAIG  +RR+
Sbjct: 141 MTTDNTGVWTSEDDK-IAAIGVHMRRN 166


>UniRef50_A0VH00 Cluster: Putative uncharacterized protein; n=2;
           Comamonadaceae|Rep: Putative uncharacterized protein -
           Delftia acidovorans SPH-1
          Length = 332

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5   PREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDP 57
           P++   +NA + P   A+KQ A  + VE  G+W S ++K   ++ +R+  + P
Sbjct: 192 PKKLGELNADHVPSGGALKQAAKDLLVE-KGIWDSLSEKQQKSVLNRVYNNAP 243


>UniRef50_Q10QY7 Cluster: Hydrolase, alpha/beta fold family protein,
           expressed; n=5; Oryza sativa|Rep: Hydrolase, alpha/beta
           fold family protein, expressed - Oryza sativa subsp.
           japonica (Rice)
          Length = 330

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 32  ETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMG 77
           +T  +W  + + F   +GHRL+RH  G V RL I    G+A  + G
Sbjct: 271 KTLILWGDKDQVFPLDLGHRLQRH-LGDVSRLEIIKDAGHALQLEG 315


>UniRef50_Q9YBC8 Cluster: Dihydrolipoyl dehydrogenase; n=2;
           Desulfurococcales|Rep: Dihydrolipoyl dehydrogenase -
           Aeropyrum pernix
          Length = 464

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 16  KPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASV 75
           K ++ A+++      VE +GV   E    + A+G R    D GL ++L + + +     V
Sbjct: 225 KSKVEAVERRERYAVVEVSGVGKMEYDAILVAVGRRPNTGDVGL-EKLGVKLDKAGYIQV 283

Query: 76  MG----TFGPGAIQSG 87
            G    T  PG   SG
Sbjct: 284 DGATLETGVPGVYASG 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,305,140
Number of Sequences: 1657284
Number of extensions: 3139549
Number of successful extensions: 7775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7771
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 575,637,011
effective HSP length: 68
effective length of query: 22
effective length of database: 462,941,699
effective search space: 10184717378
effective search space used: 10184717378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)