GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   1.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   2.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    20   3.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   6.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   8.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     19   8.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 31  VETTGVWSSEAKKFIAAIGHRLR 53
           ++ TGVW    +  ++ +G +LR
Sbjct: 757 IKITGVWLKFLRVILSVVGVKLR 779


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 49  GHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQS 86
           G  L  H P L Q+  +A  +    +  G  GPG  +S
Sbjct: 300 GGPLHDHRPALAQQRRVAAVQVPQLAGGGRRGPGPARS 337


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 10 NVNASYKPQIAAIKQNAYGMAVET 33
          ++NA   P+   I QN YG+   T
Sbjct: 48 DLNAQNHPRGLTIIQNGYGLPGHT 71


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 49 GHRLRRHDPGLVQRLSIAIQRGNAASVMG--TFGPGAIQ 85
          G R R   PG+V        R ++A+ MG   +G  A Q
Sbjct: 39 GGRRRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQ 77


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 39  SEAKKFIAAIGHRLRRHD 56
           S  ++F+ A+   LRRH+
Sbjct: 731 SARRRFVVAVVGFLRRHN 748


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.0 bits (37), Expect = 8.2
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 47  AIGHRLRRHDPGLVQRLSIAIQRGNAAS 74
           A+ H L RHD  +++   +      A S
Sbjct: 133 AMPHNLTRHDGSVIKNQGMPTMEAIARS 160


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,973
Number of Sequences: 317
Number of extensions: 636
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 114,650
effective HSP length: 47
effective length of query: 43
effective length of database: 99,751
effective search space:  4289293
effective search space used:  4289293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)