Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
(90 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1411 + 37127098-37128279 29 0.46
03_04_0162 + 17858802-17861168 29 0.60
07_01_0300 - 2164188-2165437,2165568-2165652 28 1.1
06_01_0952 - 7336609-7337858,7337989-7338073 28 1.1
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 27 1.4
01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305 27 1.8
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 27 2.4
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856... 27 2.4
02_02_0085 - 6643562-6644965 26 3.2
08_02_0214 + 14355436-14355473,14355584-14355596,14355695-143558... 26 4.3
05_05_0002 - 21412670-21413400,21414635-21414746 26 4.3
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 26 4.3
05_05_0054 - 21936875-21937346,21937452-21937927 25 5.6
07_01_0299 - 2160702-2161984,2162116-2162137 25 7.4
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 25 7.4
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 25 7.4
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 25 7.4
01_01_0350 + 2782189-2782650,2783778-2783798,2787172-2787690,278... 25 7.4
12_01_0156 + 1188143-1189957 25 9.8
11_01_0158 + 1307648-1309462 25 9.8
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 25 9.8
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179... 25 9.8
04_01_0167 + 1864956-1865495 25 9.8
03_05_0573 - 25737373-25737774 25 9.8
01_06_0248 + 27862048-27864310,27864331-27864776 25 9.8
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 25 9.8
>01_06_1411 + 37127098-37128279
Length = 393
Score = 29.1 bits (62), Expect = 0.46
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 50 HRLRRHDPGLVQRLSIAIQ---RGNAASVMGTFG--PGAIQSGLFD 90
HRLRRHDPG+++ L + R + +V+G G GA L D
Sbjct: 142 HRLRRHDPGVLRNLPSLLSLPGRIPSCAVVGNSGILLGASHGALID 187
>03_04_0162 + 17858802-17861168
Length = 788
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 41 AKKFIAAIGH--RLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAI 84
A F+ GH R DPGLV +++A G +++G G G I
Sbjct: 612 ATAFLTGAGHINPARAADPGLVYDIAVADYAGYICALLGDAGLGTI 657
>07_01_0300 - 2164188-2165437,2165568-2165652
Length = 444
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 37 WSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQSGLFD 90
WS+ ++F+A +G R H LV+ A V GA+ + LFD
Sbjct: 147 WSTSQEQFMAEVGSVGRIHHINLVRLFGFCFDADVRALVYEYMDNGALDAYLFD 200
>06_01_0952 - 7336609-7337858,7337989-7338073
Length = 444
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 37 WSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQSGLFD 90
WS+ ++F+A +G R H LV+ A V GA+ + LFD
Sbjct: 147 WSTSQEQFMAEVGSVGRIHHINLVRLFGFCFDADVRALVYEYMDNGALDAYLFD 200
>12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 11 VNASYKPQIAA-IKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQR 62
V+ S++P I IK+ + +E TGV +KKF++A+ R L+ +
Sbjct: 1065 VDISWQPSILQDIKRLTHLRKLEVTGVNKKNSKKFLSALAALSRLESLSLISK 1117
>01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305
Length = 273
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 4 EPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRL 63
+P E V Q Q +G+ ++ GV+S A++ + +L+ H + L
Sbjct: 103 KPEEAQEVWKEMLKQFKDEAQRMHGLTLQAYGVYSQRAREVLLEASEKLKIHADKAQKDL 162
Query: 64 SI 65
S+
Sbjct: 163 SV 164
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 36 VWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASV 75
VW K F + HRL+RH G RL + G+A ++
Sbjct: 236 VWGERDKVFPMELAHRLKRH-LGESSRLVVIRNAGHAVNL 274
>03_04_0065 +
16984736-16984835,16984932-16985369,16985511-16985635,
16985747-16985881,16985954-16986012,16986082-16986843,
16986973-16987118,16987151-16987251
Length = 621
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 4 EPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDP 57
E E NV AS K ++ Q A A + G ++A+KF + +G+R + P
Sbjct: 215 ERDEAINVAASLKEKVV---QEASDAATTSGGKAPTKARKFSSVLGNRRKAETP 265
>02_02_0085 - 6643562-6644965
Length = 467
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 5 PREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAA 47
P+ S + P++ A +A+ + + TTG W+ + K AA
Sbjct: 204 PKLASAAKGTASPRVLAAAVSAWTLVLTTTGGWNKKKKVSPAA 246
>08_02_0214 +
14355436-14355473,14355584-14355596,14355695-14355804,
14355975-14356072,14356167-14356331,14356553-14356664,
14357217-14357751,14357868-14357965,14358084-14359203
Length = 762
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 17 PQIAAIKQNAY--GMAVETTGVWSSEAKKFIAAIGHRLRRHDPGL 59
P + + NA+ GM++ETT + S++ I A L DP +
Sbjct: 345 PNVVTLGNNAHMTGMSLETTTLHSTQLYSMIKASDAALASSDPAV 389
>05_05_0002 - 21412670-21413400,21414635-21414746
Length = 280
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 22 IKQNAYGMAVETTGVWSSEAKKFIAAIGHR 51
+ N YGMAV GV+ A ++ A IG+R
Sbjct: 207 VTTNIYGMAVMAVGVYC--ASRYAADIGNR 234
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 42 KKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQSGL 88
++FIA + R H LV+ + I I+R V G+++S L
Sbjct: 346 REFIAEVEMLSRLHHRNLVKLIGICIERSTRCLVFELVPNGSVESHL 392
>05_05_0054 - 21936875-21937346,21937452-21937927
Length = 315
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 35 GVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVM 76
G WS E K L R+DP +R+++ + A VM
Sbjct: 38 GAWSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVM 79
>07_01_0299 - 2160702-2161984,2162116-2162137
Length = 434
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 42 KKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQSGLFD 90
++F+A +G R H LV+ A V G GA+ + LFD
Sbjct: 125 EQFMAEVGTIGRTHHINLVRLFGFCYDAAVRALVYEYMGNGALDAYLFD 173
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 59 LVQRLSIAIQRGNAASVMGTFGPG 82
+++ ++I ++RG A+V+GT G G
Sbjct: 698 VLKGINIEVRRGELAAVVGTVGSG 721
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 VWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASV 75
+W + + F + HRL RH G RL + + G+A ++
Sbjct: 269 IWGEQDQVFPMELAHRLERH-LGEKSRLVVIKKAGHAVNL 307
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 50 HRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPG 82
H L R DP L +S+A +RG + M PG
Sbjct: 66 HFLLRWDPSLGGAVSLAPRRGGGGATMWETVPG 98
>01_01_0350 +
2782189-2782650,2783778-2783798,2787172-2787690,
2787780-2788015,2788110-2788242,2788482-2788547,
2789200-2789454
Length = 563
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 38 SSEAKKFIAAIGHRLRRHDPGLV 60
S EA++F+ GHRL D G V
Sbjct: 501 SGEAREFLRRRGHRLTSTDSGAV 523
>12_01_0156 + 1188143-1189957
Length = 604
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 4 EPREGSNVNASYKPQIAAIKQNAYGMA 30
EP + V KP++ A+K NA+G A
Sbjct: 538 EPEKVLVVGVCGKPRLGAVKGNAFGNA 564
>11_01_0158 + 1307648-1309462
Length = 604
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 4 EPREGSNVNASYKPQIAAIKQNAYGMA 30
EP + V KP++ A+K NA+G A
Sbjct: 538 EPEKVLVVGVCGKPRLGAVKGNAFGNA 564
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 46 AAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFG 80
A+ G RH G +L+I RGNA + G+ G
Sbjct: 512 ASSGSLGERHSNGGALKLNIKKDRGNANPIRGSSG 546
>07_03_0200 -
15016084-15016342,15016814-15016869,15016963-15017960,
15018707-15018768,15019242-15019274,15019697-15019881,
15020033-15020133,15020783-15020795,15021216-15021319,
15021593-15021693,15022773-15022849,15022965-15023021,
15023158-15023268,15023803-15023859
Length = 737
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 20 AAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDP 57
A ++++ + G W + +K I A+ H L HDP
Sbjct: 395 AVLREDKSRVRFLADGTWGT--RKVIGAVAHDLGAHDP 430
>04_01_0167 + 1864956-1865495
Length = 179
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 3 GEPREGSNVNASYKPQIAAIKQNAYGMAVE 32
GEPR+G +P++A ++ A +VE
Sbjct: 146 GEPRDGEAGGELRRPRVAEVRHEARRASVE 175
>03_05_0573 - 25737373-25737774
Length = 133
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 38 SSEAKKFIAAIGHRLRRHDPGLVQRL 63
+S A + A HRL+R DP L+ RL
Sbjct: 41 ASRAHHPLFACPHRLQRRDPPLLPRL 66
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 36 VWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAI 67
VWS + + F+A + R D G ++S AI
Sbjct: 360 VWSIQQRSFVAGMIRNTRSDDDGDTNKMSGAI 391
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 38 SSEAKKFIAAIGHRLRRHDPGLV 60
S EA++F+ GHRLR G V
Sbjct: 558 SGEAREFLRRRGHRLRSTGSGAV 580
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,997
Number of Sequences: 37544
Number of extensions: 84352
Number of successful extensions: 211
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 27
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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