GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)             26   3.7  
SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   3.7  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               25   8.6  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    25   8.6  
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)                 25   8.6  
SB_30179| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)              25   8.6  
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               25   8.6  
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)                 25   8.6  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)
          Length = 707

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 2   RGEPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQ 61
           RGEP  GSN +     +I A   +  G   + T    SE K  + +  H +++H  G   
Sbjct: 74  RGEPVNGSNNHVKATEEIVARNDHVNGGNAQVT----SEGKHLVTSTEH-IKQHPVGQTS 128

Query: 62  RLSIAIQRGNAASVMG 77
              + I         G
Sbjct: 129 ERFVEISNRKEVKKFG 144


>SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 2   RGEPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQ 61
           RGEP  GSN +     +I A   +  G   + T    SE K  + +  H +++H  G   
Sbjct: 90  RGEPVNGSNNHVKATEEIVARNDHVNGGNAQVT----SEGKHLVTSTEH-IKQHPVGQTS 144

Query: 62  RLSIAIQRGNAASVMG 77
              + I         G
Sbjct: 145 ERFVEISNRKEVKKFG 160


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 2   RGEPREGSNVNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIG 49
           RG  R     NA Y P +   +       V+T  +W  E ++ I  IG
Sbjct: 420 RGRSRSLIGQNAVYYPLVTQRQLTEGDWEVDTKTIWVDEERRLIYFIG 467


>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 443 ATWSPTLATLTANPPKSLSKSCGVVNIQGLQVRALFDRGSSESYFHPSLVEQASLTVQPS 502

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 503 SSTVSMATSSTGAIK 517


>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 323

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 54  ATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 113

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 114 SSTVSMATSSTGAIK 128


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 167 ATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 226

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 227 SSTVSMATSSTGAIK 241


>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
          Length = 998

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 259 ATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 318

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 319 SSTVSMATSSTGAIK 333


>SB_30179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 30 AVET-TGVWSSEAKKFIAAIGHRLRR 54
          A ET TG W S   +F+A   H++R+
Sbjct: 49 ASETRTGKWLSRRYRFVAGYSHQIRK 74


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 19   IAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHR 51
            +A +    Y  AV+T    SS   K I A+ HR
Sbjct: 1979 VAGVPAATYASAVQTGTTSSSTVNKSIQALAHR 2011


>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
          Length = 284

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 4   EPREGSNVNASYKPQIAAIKQNAYGMAVETTG 35
           EP+EG    ASY+P    + +  + M V   G
Sbjct: 162 EPKEGQGWRASYEPSSHPLHKYEFDMIVGADG 193


>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 528

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 259 ATWSPTLATLTANPPRSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 318

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 319 SSTVSMATSSTGAIK 333


>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
          Length = 870

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 259 ATWSPTLATLTANPPRSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 318

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 319 SSTVSMATSSTGAIK 333


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAI--GHRLRRHDPGLVQRLSIAIQRG 70
           A++ P +A +  N      ++ GV + +  +  A    G       P LV++ S+ +Q  
Sbjct: 543 ATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPS 602

Query: 71  NAASVMGTFGPGAIQ 85
           ++   M T   GAI+
Sbjct: 603 SSTVSMATSSTGAIK 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,070
Number of Sequences: 59808
Number of extensions: 80535
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 13
length of query: 90
length of database: 16,821,457
effective HSP length: 67
effective length of query: 23
effective length of database: 12,814,321
effective search space: 294729383
effective search space used: 294729383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)