GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23647-4|AAK29991.1|  233|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    25   6.5  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    25   6.5  
AL033514-27|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    25   6.5  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    25   6.5  

>L23647-4|AAK29991.1|  233|Caenorhabditis elegans Hypothetical
           protein ZC262.2a protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 12  NASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIG 49
           ++S +P      +  +  A+  TGV SS+A KF+  +G
Sbjct: 145 SSSSEPATGGKNEKLWSSAIAATGVDSSKANKFMRLMG 182


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
            protein F28D1.10 protein.
          Length = 1141

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 5    PREGSNVNASYKPQIAAIKQNAY--GMAVETTG 35
            PR G +  +SYKP I A   N++   MA+ T G
Sbjct: 1017 PRIGMSDLSSYKPSIQASLNNSHCVPMAINTIG 1049


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
            protein F28D1.10 protein.
          Length = 1141

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 5    PREGSNVNASYKPQIAAIKQNAY--GMAVETTG 35
            PR G +  +SYKP I A   N++   MA+ T G
Sbjct: 1017 PRIGMSDLSSYKPSIQASLNNSHCVPMAINTIG 1049


>AL033514-27|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 30  AVETTGVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPG 82
           ++E    W  + K  +     R R++ P +++ + + I+ G    V+G  G G
Sbjct: 891 SLENEEKWPVKGKIELDGFSMRYRKNLPLVLKNIDLKIEGGERIGVIGRTGSG 943


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
            protein.
          Length = 1141

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 5    PREGSNVNASYKPQIAAIKQNAY--GMAVETTG 35
            PR G +  +SYKP I A   N++   MA+ T G
Sbjct: 1017 PRIGMSDLSSYKPSIQASLNNSHCVPMAINTIG 1049


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,095
Number of Sequences: 27539
Number of extensions: 60147
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 12,573,161
effective HSP length: 69
effective length of query: 21
effective length of database: 10,672,970
effective search space: 224132370
effective search space used: 224132370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)