GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001046-TA|BGIBMGA001046-PA|undefined
         (90 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14930.2 68418.m01752 leaf senescence-associated protein (SAG...    26   2.8  
At5g14930.1 68418.m01751 leaf senescence-associated protein (SAG...    26   2.8  
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi...    26   2.8  
At5g06350.1 68418.m00711 expressed protein                             25   6.4  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    25   6.4  
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi...    25   8.5  
At3g43920.1 68416.m04701 ribonuclease III family protein similar...    25   8.5  
At2g15860.1 68415.m01818 expressed protein  and genefinder             25   8.5  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    25   8.5  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    25   8.5  

>At5g14930.2 68418.m01752 leaf senescence-associated protein
          (SAG101) nearly identical to leaf senescence-associated
          gene SAG101 (putative acyl hydrolase) [Arabidopsis
          thaliana] GI:8699168; contains Pfam profile PF01764:
          Lipase
          Length = 537

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 20 AAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGL 59
          +++K +A G  V T+G+  S   K +         HDPGL
Sbjct: 5  SSLKGSALGKLVVTSGLLHSSWSKILEIHNPPYSNHDPGL 44


>At5g14930.1 68418.m01751 leaf senescence-associated protein
          (SAG101) nearly identical to leaf senescence-associated
          gene SAG101 (putative acyl hydrolase) [Arabidopsis
          thaliana] GI:8699168; contains Pfam profile PF01764:
          Lipase
          Length = 131

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 20 AAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLRRHDPGL 59
          +++K +A G  V T+G+  S   K +         HDPGL
Sbjct: 5  SSLKGSALGKLVVTSGLLHSSWSKILEIHNPPYSNHDPGL 44


>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
           factor Mbb1, chloroplast precursor {Chlamydomonas
           reinhardtii}; contains Pfam profile: PF00515: TPR Domain
          Length = 652

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 35  GVWSSEAKKFIAAIGHRLRRHDPGLVQRLSIAIQRGNAASV 75
           GV + E  + +  IGH L   DP L+Q L +   + ++A++
Sbjct: 385 GVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANL 425


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 13  ASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFIAAIGHRLR 53
           +S+KP+I  I QN   +    +   + E K  +   G RLR
Sbjct: 842 SSFKPEIDLILQNVITLQSSRSTSLTVEGKHMMKIAGERLR 882


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 11   VNASYKPQIAAIKQNAYGMAVETTGVWSSEAKKFI 45
            V  +   ++  ++QN YG+ +    VW +  ++ +
Sbjct: 2484 VRDAMSAELRVVRQNKYGLILHAESVWPTHLQQLV 2518


>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 657

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 12  NASYKPQIAAIKQNAYGMAVETTGVWSSEAKKF 44
           NA+Y P +A       G+A+  T + S   KKF
Sbjct: 185 NATYVPNLAGTIAMVIGIAIWVTSLPSFRRKKF 217


>At3g43920.1 68416.m04701 ribonuclease III family protein similar
          to RNA helicase/RNAseIII CAF protein [Arabidopsis
          thaliana] GI:6102610; contains Pfam profiles PF02170:
          PAZ domain, PF00636: RNase3 domain
          Length = 1531

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 12 NASYKPQIAAIKQNAYGMAVETTGVWSSE-AKKFIAAIG 49
          N SY+ ++  + +N   +AV  TG+  SE  K+ I A+G
Sbjct: 44 NGSYELKVYEVAKNRNIIAVLGTGIDKSEITKRLIKAMG 82


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 47  AIGHRLRRHDPGLVQRLSIAIQRGNAASVMGTFGPGAIQSG 87
           A G+ L+     LVQ+L  ++Q+G++    G+  P  +++G
Sbjct: 154 AFGNALKG-GTSLVQKLENSVQQGSSPREAGSGAPSLLETG 193


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
            SP|O04379 Argonaute protein (AGO1) {Arabidopsis
            thaliana}; contains Pfam profiles PF02171: Piwi domain,
            PF02170: PAZ domain
          Length = 1050

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 1    MRGEPREGSNVNASYKPQIAAIKQN 25
            M G    G NVNA+ +P + A+K+N
Sbjct: 1019 MAGRSTRGPNVNAAVRP-LPALKEN 1042


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
            SP|O04379 Argonaute protein (AGO1) {Arabidopsis
            thaliana}; contains Pfam profiles PF02171: Piwi domain,
            PF02170: PAZ domain
          Length = 1048

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 1    MRGEPREGSNVNASYKPQIAAIKQN 25
            M G    G NVNA+ +P + A+K+N
Sbjct: 1017 MAGRSTRGPNVNAAVRP-LPALKEN 1040


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,214
Number of Sequences: 28952
Number of extensions: 60270
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 12,070,560
effective HSP length: 68
effective length of query: 22
effective length of database: 10,101,824
effective search space: 222240128
effective search space used: 222240128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)