GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001045-TA|BGIBMGA001045-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    30   0.45 
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   5.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   9.7  

>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 224 RNRARDYEVTIPSLKNQKVLP--PKRNSPHGQDDRNPDIIPLSKDD 267
           +N   ++ +T+P     KVLP  PK +S H   ++ P+IIP  ++D
Sbjct: 27  KNTEANFPITLP-----KVLPTDPKASSLHKPQEQQPNIIPSKEED 67


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 171 SEHVSFTVETAPRLAPRTEAQAAWEVNWAVGG 202
           S++ S T+ T P   P+   +  WEV + V G
Sbjct: 190 SKYGSVTIMTGPLYLPKKNERGQWEVQYRVIG 221


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 244 PPKRNSPHGQDDRNPDIIPLSKDDFLGNLDSVLSVWSYRGSLFG 287
           P  R SP G   R+P    +   + +G++D +L+   +  S  G
Sbjct: 352 PAMRRSPVGAASRSPSRSTIGISNRIGSVDDLLNTRQFTSSPIG 395


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,387
Number of Sequences: 5004
Number of extensions: 50827
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 3
length of query: 292
length of database: 2,362,478
effective HSP length: 72
effective length of query: 220
effective length of database: 2,002,190
effective search space: 440481800
effective search space used: 440481800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)