GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001045-TA|BGIBMGA001045-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1054 - 25721220-25721582,25723163-25723727,25724162-257244...    30   1.9  
03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350     29   4.4  
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130...    28   7.7  

>12_02_1054 -
           25721220-25721582,25723163-25723727,25724162-25724476,
           25724492-25724772
          Length = 507

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 219 TVFKLRNRARDYEVTIPSLKNQKVLPPKRNSPHG 252
           TVF L    R YEVT+P+       PP RNS HG
Sbjct: 70  TVFALAGGGRTYEVTLPA------EPPIRNSSHG 97


>03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350
          Length = 306

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 50  KEGRSVLTYMPVSDV--DYGTLSCRATNLAGQQPMPCL 85
           + G   +T+ P++D+    GTL+ R    AG  P PCL
Sbjct: 118 QRGIDPITHRPIADLMQSIGTLAIRPPPAAGAAPPPCL 155


>04_04_0918 -
           29411239-29411373,29412276-29412526,29412772-29413009,
           29413133-29414251,29414540-29415106
          Length = 769

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 54  SVLTYMPVSDVDYGTLSCRATNLAGQQ 80
           SVL ++ + ++D+GTL+C  TNLA +Q
Sbjct: 257 SVLLWL-MREMDHGTLTCAPTNLAVKQ 282


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,917,664
Number of Sequences: 37544
Number of extensions: 352150
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 3
length of query: 292
length of database: 14,793,348
effective HSP length: 81
effective length of query: 211
effective length of database: 11,752,284
effective search space: 2479731924
effective search space used: 2479731924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)