GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001045-TA|BGIBMGA001045-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like
         (292 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 41  DAERFTVEVKEGRSVLTYMPVSDVDYGTLSCRATNLAGQQPMPCLYTLL 89
           D ERF  +    R  + Y+P  D   G  +C     A  Q    L T+L
Sbjct: 417 DPERFDQDAMASRHPMHYLPFGD---GPRNCIGARFAVYQTKVGLITIL 462


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 223 LRNRARDYEVTIPSLKNQKVLPPKRNSPHGQDDRNPDIIPLSKDDFL 269
           LRNR  D++ T      ++     RN  + + DR  + +   K+  L
Sbjct: 217 LRNRTHDFQHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEKEKLL 263


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 12  TKVICEVDAYPPPNTFEW 29
           T+ +C V A  PP T  W
Sbjct: 628 TRTVCGVAAGDPPLTISW 645



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 21   YPPPNTFEWTLNSSAGSIRVDAERFTVEVKEGRSV 55
            Y P N F WTL S+  S+++   RF V   +  SV
Sbjct: 1536 YRPINEFHWTLVSN--SVKMQ-RRFVVTNLQPSSV 1567


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 223 LRNRARDYEVTIPSLKNQKVLPPKRNSPHGQDDRNPDIIPLSKDDFL 269
           LR+R  D++ T      ++     RN  + + DR  + +   K+  L
Sbjct: 217 LRSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKEKLL 263


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 116 AGYEGGLRCV 125
           +GYEG LRC+
Sbjct: 235 SGYEGALRCL 244


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 116 AGYEGGLRCV 125
           +GYEG LRC+
Sbjct: 235 SGYEGALRCL 244


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 116 AGYEGGLRCV 125
           +GYEG LRC+
Sbjct: 235 SGYEGALRCL 244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 21   YPPPNTFEWTLNSSAGSIRVDAERFTVEVKEGRSV 55
            Y P N F WTL S+  S+++   RF V   +  SV
Sbjct: 1532 YRPINEFHWTLVSN--SVKMQ-RRFVVTNLQPSSV 1563


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,918
Number of Sequences: 429
Number of extensions: 3517
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 292
length of database: 140,377
effective HSP length: 57
effective length of query: 235
effective length of database: 115,924
effective search space: 27242140
effective search space used: 27242140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)