GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001045-TA|BGIBMGA001045-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like
         (292 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61820.1 68418.m07757 expressed protein MtN19, Medicago trunc...    32   0.52 
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    29   2.8  
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    29   2.8  
At5g41720.1 68418.m05073 F-box family protein contains Pfam PF00...    29   4.9  
At4g24720.1 68417.m03537 hypothetical protein                          28   6.4  
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i...    28   8.5  

>At5g61820.1 68418.m07757 expressed protein MtN19, Medicago
           truncatula, EMBL:MTY15367
          Length = 475

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 100 CTVYNLTDDSLDLACIAGYEGGLRCVY 126
           C +YN+T D    A   GY+GGL C Y
Sbjct: 208 CDLYNVTIDEYGRAIRPGYKGGLYCCY 234


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 185 APRTEAQAAWEVNW--AVGGALCFITVIGVIVCLAMTVFKLRNRARDYEVTIPSLKNQKV 242
           A + + Q+ WE +    VGGA+  + V  V++ LA+   + +     YE    ++K Q++
Sbjct: 562 AEQKKKQSWWEKHLLGVVGGAMISLLVTSVMIKLALVWRRRKQEEATYEPVNAAIKEQEL 621

Query: 243 LP 244
            P
Sbjct: 622 QP 623


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           mitochondrial sorting protein 1 (MSP1) (TAT-binding
           homolog 4) (Swiss-Prot:P28737) [Saccharomyces
           cerevisiae]
          Length = 1252

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 233 TIPSLKNQKVLPPKRNSPHGQDDRNPDIIPLSKDDFLGNLD 273
           +I  L+N   LPP   S   Q +    ++P S DDF+ ++D
Sbjct: 284 SISKLQNVPFLPPTAKSVKRQQNSEVPVLPSSCDDFILDVD 324


>At5g41720.1 68418.m05073 F-box family protein contains Pfam
           PF00646: F-box domain; similar to unknown protein
           (gb|AAD32901.1);
          Length = 186

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 211 GVIVCLAMTVFKLRNRARDYEVTIPSLKNQKVLP-PK 246
           G+++C+ + VFK R +  DY V  P+ K  +++P PK
Sbjct: 105 GILLCVDV-VFKGRQKIPDYIVCKPATKQYRIIPNPK 140


>At4g24720.1 68417.m03537 hypothetical protein 
          Length = 209

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 26 TFEWTLNSSAGSIRVDAERFTVEVKEGRSVLTYMPVSDVD 65
          T  W L SS+  +  D    T++VK     L Y P+S VD
Sbjct: 57 TITWKLKSSSAKVDTDTAFKTIQVK-----LCYAPISQVD 91


>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
           identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA  SUVH5 (SUVH5) GI:13517750
          Length = 794

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 71  CRATNLAGQQPMPCLYT---LLPA-TRPDQPTNCTVYNLTDDSLDLACI 115
           C   NL  ++P P +YT   + P   RP  P +C   N    S + ACI
Sbjct: 554 CAVNNLDDEKPPPFIYTAKMIYPDWCRPIPPKSCGCTNGCSKSKNCACI 602


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,943,884
Number of Sequences: 28952
Number of extensions: 272100
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 7
length of query: 292
length of database: 12,070,560
effective HSP length: 80
effective length of query: 212
effective length of database: 9,754,400
effective search space: 2067932800
effective search space used: 2067932800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)