GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001044-TA|BGIBMGA001044-PA|IPR002048|Calcium-binding
EF-hand
         (171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.13 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 78  FRSFDRDNSGNIDRVELKN-ALTAFGYRLSDDV-VGIMVQKFDRFGRGTILFDDFIQCCV 135
           F  +DR+N+GN++R EL+  A       L     +G M+   D  G G +  ++F     
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFS 301

Query: 136 TLYTLT 141
            LY+++
Sbjct: 302 KLYSVS 307


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 68  WKYVSDWQNCFRSFD 82
           W + +DW + +RS D
Sbjct: 112 WLFTTDWCDVWRSLD 126


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 39  FNPETVRLMIGMFDKQNRGVISFE 62
           +NPETV     M D+     ISFE
Sbjct: 419 YNPETVSTDYDMSDRLYFEEISFE 442


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,998
Number of Sequences: 429
Number of extensions: 2173
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 140,377
effective HSP length: 54
effective length of query: 117
effective length of database: 117,211
effective search space: 13713687
effective search space used: 13713687
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)