Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   122   2e-29
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   120   8e-29
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   5.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   9.8  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    24   9.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  122 bits (295), Expect = 2e-29
 Identities = 58/126 (46%), Positives = 69/126 (54%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRG AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWTLV
Sbjct: 23  GKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
             +TR KY        PVIN++++           P  PVI+                GG
Sbjct: 83  PNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGG 142

Query: 133 ACVLSA 138
              L A
Sbjct: 143 VVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  120 bits (289), Expect = 8e-29
 Identities = 57/126 (45%), Positives = 69/126 (54%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRG AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWTL+
Sbjct: 23  GKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLL 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
             + R KY        PVIN++++           P+ PVIV                GG
Sbjct: 83  PNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAGG 142

Query: 133 ACVLSA 138
              L A
Sbjct: 143 VVELIA 148


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 64  NLDKLWTLVSEQTRLKYASAPDGKVP 89
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 55   KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 95
            +NK+F   L+LD+L   +S    L   S     V VI+  K
Sbjct: 1532 ENKSFSATLDLDRLLFRISVYDLLLLQSIAQASVSVISSYK 1572


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 12  PGKHRKHPGGRGNAGGEHHHRINMDKYHP 40
           P K RK  G RG +    +HRI   + HP
Sbjct: 312 PSKTRKVGGRRGKSSSNDNHRI--PQLHP 338


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 35  MDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAP 84
           +DK   G   +LG+R   F+ N  +  +  L K+   V E+ R +Y   P
Sbjct: 443 IDKDKLGGTMRLGLRPTFFQPNSEWSKLRKLHKMVDEVLERHRHRYEINP 492


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,043
Number of Sequences: 5004
Number of extensions: 23628
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 8
length of query: 138
length of database: 2,362,478
effective HSP length: 66
effective length of query: 72
effective length of database: 2,032,214
effective search space: 146319408
effective search space used: 146319408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)