Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   166   2e-41
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   166   2e-41
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   166   2e-41
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   166   2e-41
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   160   1e-39
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   145   5e-35
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    46   6e-05

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  166 bits (404), Expect = 2e-41
 Identities = 72/126 (57%), Positives = 87/126 (69%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWTLV
Sbjct: 23  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
           SEQTR+  A    G  P+I++V++           PKQPVIV               VGG
Sbjct: 83  SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGG 142

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 143 ACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  166 bits (404), Expect = 2e-41
 Identities = 72/126 (57%), Positives = 87/126 (69%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWTLV
Sbjct: 22  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLV 81

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
           SEQTR+  A    G  P+I++V++           PKQPVIV               VGG
Sbjct: 82  SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGG 141

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 142 ACVLVA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  166 bits (404), Expect = 2e-41
 Identities = 72/126 (57%), Positives = 87/126 (69%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWTLV
Sbjct: 23  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
           SEQTR+  A    G  P+I++V++           PKQPVIV               VGG
Sbjct: 83  SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGG 142

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 143 ACVLVA 148


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  166 bits (404), Expect = 2e-41
 Identities = 72/126 (57%), Positives = 87/126 (69%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWTLV
Sbjct: 23  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
           SEQTR+  A    G  P+I++V++           PKQPVIV               VGG
Sbjct: 83  SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGG 142

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 143 ACVLVA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  160 bits (389), Expect = 1e-39
 Identities = 70/126 (55%), Positives = 86/126 (68%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++++ ++N++FCP +NLDKLWTLV
Sbjct: 23  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRNQSFCPTVNLDKLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
           SEQTR+  A    G  P+I++V++            KQPVIV               VGG
Sbjct: 83  SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGG 142

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 143 ACVLVA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  145 bits (351), Expect = 5e-35
 Identities = 57/84 (67%), Positives = 72/84 (85%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWTLV
Sbjct: 23  GKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKA 96
           SEQTR+  A    G  P+I++V++
Sbjct: 83  SEQTRVNAAKNKTGAAPIIDVVRS 106


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
          protein.
          Length = 34

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 63 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 96
          +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 1  VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,014,414
Number of Sequences: 224733
Number of extensions: 763746
Number of successful extensions: 1217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 13
length of query: 138
length of database: 73,234,838
effective HSP length: 83
effective length of query: 55
effective length of database: 54,581,999
effective search space: 3002009945
effective search space used: 3002009945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)