Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   143   4e-35
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    64   5e-11
L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain (pr...    31   0.23 
L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain (pr...    31   0.23 
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   0.91 
AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    28   2.8  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    28   2.8  
U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    27   3.7  
Z34533-2|CAA84296.1|  166|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   4.8  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  143 bits (347), Expect = 4e-35
 Identities = 65/126 (51%), Positives = 80/126 (63%), Gaps = 3/126 (2%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG+HHHRIN DKYHPGYFGK+GMR FH  KN+++CP +N+++LW+LV
Sbjct: 23  GKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
            ++ R K   A  GK PVI+  K            P+ P+IV                GG
Sbjct: 83  PQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGG 139

Query: 133 ACVLSA 138
           ACVL A
Sbjct: 140 ACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 48  MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXX 107
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 108 PKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 138
           P+ P+IV                GGACVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform a
           protein.
          Length = 456

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 20  GGRGNAGGEHHH-RINMDK-YHPGYFGKLGMRNFHF 53
           GGRG AGG HHH  +++++ +   + G  GM  F+F
Sbjct: 115 GGRGGAGGFHHHGNVDVNEIFRRAFGGGGGMGGFNF 150


>L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform b
           protein.
          Length = 446

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 20  GGRGNAGGEHHH-RINMDK-YHPGYFGKLGMRNFHF 53
           GGRG AGG HHH  +++++ +   + G  GM  F+F
Sbjct: 115 GGRGGAGGFHHHGNVDVNEIFRRAFGGGGGMGGFNF 150


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 23  GNAGGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 69
           G+ G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 282 GDIGVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical
          protein B0041.2b protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 13 GKHRKHPGG---RGNAGGEHHHRINMDKYHPG 41
          G H  + GG   RG  GG H+ RI  + +H G
Sbjct: 13 GPHHMNGGGGGRRGGGGGMHNQRIQQNPHHGG 44


>AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical
          protein B0041.2a protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 13 GKHRKHPGG---RGNAGGEHHHRINMDKYHPG 41
          G H  + GG   RG  GG H+ RI  + +H G
Sbjct: 13 GPHHMNGGGGGRRGGGGGMHNQRIQQNPHHGG 44


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 23  GNAGGEHHHRINMDKYHPGYFGKLGMRNF 51
           G+ G  HH +++   +  GY   LG+R+F
Sbjct: 398 GSIGNGHHGKVDFGTWGGGYSDNLGVRDF 426


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 46  LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 96
           LG  NF+++ ++++      +  WT  + +T LK+  +    +P  N+  +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155


>U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical
           protein F48C1.8 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)

Query: 18  HPGGRGNAGGEHHHRINMDKYHPG 41
           H  G G  GG HHH      YH G
Sbjct: 186 HHHGGGGGGGGHHHHGGGGHYHGG 209


>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 14  KHRKHPGG-RGNAGGEHHHR 32
           + R+H GG RG+ G  HHHR
Sbjct: 263 RRRQHHGGPRGHHGHRHHHR 282


>Z34533-2|CAA84296.1|  166|Caenorhabditis elegans Hypothetical
          protein B0285.3 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/47 (34%), Positives = 17/47 (36%)

Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 59
          G +   P GRG  GG      N   Y  G     G  NF    N NF
Sbjct: 15 GNNNWRPQGRGRGGGGWKGNDNRGGYRGGSSNDGGWSNFRDDGNLNF 61


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYH-PGYFGKLGMRN 50
           G H +H    G+ GG H H       H PG  G+ G R+
Sbjct: 335 GGHGRHGSRSGSPGGRHGHGGRHGPPHCPGRHGRHGSRS 373


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,123
Number of Sequences: 27539
Number of extensions: 133782
Number of successful extensions: 308
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 26
length of query: 138
length of database: 12,573,161
effective HSP length: 74
effective length of query: 64
effective length of database: 10,535,275
effective search space: 674257600
effective search space used: 674257600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)