Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
(138 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 125 1e-29
03_04_0027 + 16593133-16593573 123 6e-29
02_01_0563 + 4134954-4135388 120 3e-28
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 30 0.58
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 29 1.3
05_01_0141 - 937428-937717,938483-938705 28 3.1
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 28 3.1
03_06_0471 + 34169562-34169892,34170121-34170347 27 5.4
01_01_0164 + 1403635-1403708,1403960-1403999,1404103-1404178,140... 27 5.4
09_04_0564 + 18565583-18566449,18569662-18570123 27 7.2
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 26 9.5
>07_03_1250 - 25183375-25183815
Length = 146
Score = 125 bits (302), Expect = 1e-29
Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
GKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH +NK + P +N+++LW++V
Sbjct: 23 GKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMV 82
Query: 73 SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
+ + A A GK P++++ + P++P++V GG
Sbjct: 83 PAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKIKAAGG 140
Query: 133 ACVLSA 138
A VL+A
Sbjct: 141 AVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 123 bits (296), Expect = 6e-29
Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
GKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW++V
Sbjct: 23 GKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMV 82
Query: 73 SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ-PVIVXXXXXXXXXXXXXXDVG 131
K A A GK PVI++ + P Q P++V G
Sbjct: 83 PTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVKAKLISKVAEKKIKAAG 139
Query: 132 GACVLSA 138
GA +L+A
Sbjct: 140 GAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 120 bits (290), Expect = 3e-28
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
GKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW++V
Sbjct: 23 GKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMV 82
Query: 73 SEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVG 131
+ A A GK PVI++ + P++P++V G
Sbjct: 83 PAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAG 137
Query: 132 GACVLSA 138
GA +L+A
Sbjct: 138 GAVLLTA 144
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 19 PGGRGNAGGEHHHRINMDKYH 39
P +G GG HHH+ NM K H
Sbjct: 306 PVEKGTMGGGHHHKQNMQKQH 326
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYH 39
GK R GGRG G H+H N YH
Sbjct: 390 GKGRGR-GGRGRGRGYHYHNNNQQSYH 415
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFH 52
G H H GG G GG H H + H G+ G G H
Sbjct: 132 GGHHGHHGG-GLFGGHHGHHGGLFGGHHGFGGHHGHHGHH 170
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 12 PGKHRKHPGGRGNAGGEHHHRINMDKYH 39
P R GG G GG HHH + M H
Sbjct: 264 PASLRGGGGGVGIVGGHHHHHLFMPGVH 291
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 13 GKHRKHPGGRGNAG--GEHHHRINMDKYHPGYFGK 45
G H PGG G G G H + K+ G +GK
Sbjct: 142 GAHMVRPGGGGGHGMFGHHGGKFKKGKFKHGKYGK 176
>01_01_0164 +
1403635-1403708,1403960-1403999,1404103-1404178,
1404680-1405827
Length = 445
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 5 NNSFYLIPGKHRKHPGGRGNAGGEHHHRIN 34
NN + GK K GG G+AGG +HH+ N
Sbjct: 243 NNHHNNVNGK--KGGGGGGSAGGGNHHQNN 270
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 19 PGGRGNAGGEHHHRI 33
PGG G GG+ HH++
Sbjct: 119 PGGGGGGGGDRHHQL 133
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 16 RKHPGGRGNAGGEHHHRINMDKYHPG 41
R H GG + + H +++D+ HPG
Sbjct: 376 RGHEGGGRSVAHQLPHEVSLDEVHPG 401
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,350
Number of Sequences: 37544
Number of extensions: 159441
Number of successful extensions: 364
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 14,793,348
effective HSP length: 75
effective length of query: 63
effective length of database: 11,977,548
effective search space: 754585524
effective search space used: 754585524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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