Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
(138 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 143 4e-35
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 64 5e-11
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 31 0.23
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 31 0.23
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 0.91
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 1.6
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 1.6
AF040642-10|AAB94949.2| 576|Caenorhabditis elegans Hypothetical... 28 2.8
AC024817-17|AAU87811.1| 178|Caenorhabditis elegans C-type lecti... 28 2.8
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 27 3.7
AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf gro... 27 3.7
Z34533-2|CAA84296.1| 166|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 4.8
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 143 bits (347), Expect = 4e-35
Identities = 65/126 (51%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
GKHRKHPGGRGNAGG+HHHRIN DKYHPGYFGK+GMR FH KN+++CP +N+++LW+LV
Sbjct: 23 GKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLV 82
Query: 73 SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 132
++ R K A GK PVI+ K P+ P+IV GG
Sbjct: 83 PQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGG 139
Query: 133 ACVLSA 138
ACVL A
Sbjct: 140 ACVLVA 145
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 63.7 bits (148), Expect = 5e-11
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 48 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXX 107
MR FH KN+++CP +N+++LW+LV ++ R K A GK PVI+ K
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57
Query: 108 PKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 138
P+ P+IV GGACVL A
Sbjct: 58 PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 20 GGRGNAGGEHHH-RINMDK-YHPGYFGKLGMRNFHF 53
GGRG AGG HHH +++++ + + G GM F+F
Sbjct: 115 GGRGGAGGFHHHGNVDVNEIFRRAFGGGGGMGGFNF 150
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 20 GGRGNAGGEHHH-RINMDK-YHPGYFGKLGMRNFHF 53
GGRG AGG HHH +++++ + + G GM F+F
Sbjct: 115 GGRGGAGGFHHHGNVDVNEIFRRAFGGGGGMGGFNF 150
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 29.5 bits (63), Expect = 0.91
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 23 GNAGGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 69
G+ G E HH D YHP F +L + N + F KNK +C D+L+
Sbjct: 282 GDIGVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 13 GKHRKHPGG---RGNAGGEHHHRINMDKYHPG 41
G H + GG RG GG H+ RI + +H G
Sbjct: 13 GPHHMNGGGGGRRGGGGGMHNQRIQQNPHHGG 44
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 13 GKHRKHPGG---RGNAGGEHHHRINMDKYHPG 41
G H + GG RG GG H+ RI + +H G
Sbjct: 13 GPHHMNGGGGGRRGGGGGMHNQRIQQNPHHGG 44
>AF040642-10|AAB94949.2| 576|Caenorhabditis elegans Hypothetical
protein C50D2.1 protein.
Length = 576
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 23 GNAGGEHHHRINMDKYHPGYFGKLGMRNF 51
G+ G HH +++ + GY LG+R+F
Sbjct: 398 GSIGNGHHGKVDFGTWGGGYSDNLGVRDF 426
>AC024817-17|AAU87811.1| 178|Caenorhabditis elegans C-type lectin
protein 80 protein.
Length = 178
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 46 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 96
LG NF+++ ++++ + WT + +T LK+ + +P N+ +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 18 HPGGRGNAGGEHHHRINMDKYHPG 41
H G G GG HHH YH G
Sbjct: 186 HHHGGGGGGGGHHHHGGGGHYHGG 209
>AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf growth
factor relatedprotein 1 protein.
Length = 304
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 14 KHRKHPGG-RGNAGGEHHHR 32
+ R+H GG RG+ G HHHR
Sbjct: 263 RRRQHHGGPRGHHGHRHHHR 282
>Z34533-2|CAA84296.1| 166|Caenorhabditis elegans Hypothetical
protein B0285.3 protein.
Length = 166
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/47 (34%), Positives = 17/47 (36%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 59
G + P GRG GG N Y G G NF N NF
Sbjct: 15 GNNNWRPQGRGRGGGGWKGNDNRGGYRGGSSNDGGWSNFRDDGNLNF 61
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYH-PGYFGKLGMRN 50
G H +H G+ GG H H H PG G+ G R+
Sbjct: 335 GGHGRHGSRSGSPGGRHGHGGRHGPPHCPGRHGRHGSRS 373
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.140 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,123
Number of Sequences: 27539
Number of extensions: 133782
Number of successful extensions: 308
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 26
length of query: 138
length of database: 12,573,161
effective HSP length: 74
effective length of query: 64
effective length of database: 10,535,275
effective search space: 674257600
effective search space used: 674257600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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