Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001042-TA|BGIBMGA001042-PA|IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR013200|HAD superfamily
hydrolase-like, type 3, IPR006539|Phospholipid-translocating P-type
ATPase, flippase
         (1084 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    28   0.40 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    28   0.40 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    28   0.40 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    28   0.40 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    28   0.40 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    28   0.40 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    28   0.40 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    28   0.40 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.52 
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    26   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   6.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   8.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   8.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 11  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 50


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTH 94


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 297 HPPGPPAEPSTELPPIVTPLTQVSPNRRLLQHLNDTNDAQH 337
           HP   PA P   L P +   TQ+ P R    HL   N   H
Sbjct: 55  HPYAAPA-PGHGLQPTMGDYTQLQPQRLAPTHLQSPNTQTH 94


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 243 EMYDPETNIRTECRALNI 260
           EM++P TNI  +C  LNI
Sbjct: 1   EMWNPNTNISEDCLYLNI 18


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 805  RMILYFFLKNATFVFMVFWYQL 826
            + +  FF+ NA FV +VF  QL
Sbjct: 1267 KSVFAFFMFNALFVLVVFLLQL 1288


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 805  RMILYFFLKNATFVFMVFWYQL 826
            + +  FF+ NA FV +VF  QL
Sbjct: 1267 KSVFAFFMFNALFVLVVFLLQL 1288


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 695 LTYILDRRSGLVAPFLCLARRCSAV 719
           ++YIL+ RSG  A    +  RC+AV
Sbjct: 81  VSYILNTRSGDEAALADMISRCNAV 105


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 695 LTYILDRRSGLVAPFLCLARRCSAV 719
           ++YIL+ RSG  A    +  RC+AV
Sbjct: 82  VSYILNTRSGDEAALADMISRCNAV 106


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,741
Number of Sequences: 317
Number of extensions: 8561
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 14
length of query: 1084
length of database: 114,650
effective HSP length: 64
effective length of query: 1020
effective length of database: 94,362
effective search space: 96249240
effective search space used: 96249240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)