GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001042-TA|BGIBMGA001042-PA|IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR013200|HAD superfamily
hydrolase-like, type 3, IPR006539|Phospholipid-translocating P-type
ATPase, flippase
         (1084 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   7.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 243 EMYDPETNIRTECRALNI 260
           EM++P TNI  +C  LNI
Sbjct: 114 EMWNPNTNISEDCLYLNI 131


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 243 EMYDPETNIRTECRALNI 260
           EM++P TNI  +C  LNI
Sbjct: 114 EMWNPNTNISEDCLYLNI 131


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 228 EMTKLLQVYHIHQDIEMYDPETNIRTECRALNITEELGQISYLFSDKTGTLTENKMVFRR 287
           ++  +L V +     + Y+  T + T    +N+ + LG      S K     ENK + +R
Sbjct: 74  DINDVLNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFISKKIKKTMENKDITKR 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,769
Number of Sequences: 429
Number of extensions: 10207
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 3
length of query: 1084
length of database: 140,377
effective HSP length: 65
effective length of query: 1019
effective length of database: 112,492
effective search space: 114629348
effective search space used: 114629348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)