Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001041-TA|BGIBMGA001041-PA|IPR000873|AMP-dependent
synthetase and ligase, IPR002372|Pyrrolo-quinoline quinone,
IPR011047|Quinonprotein alcohol dehydrogenase-like, IPR009081|Acyl
carrier protein-like, IPR006163|Phosphopantetheine-binding
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18) 94 3e-19
SB_37163| Best HMM Match : PQQ (HMM E-Value=0) 62 1e-09
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 9e-09
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 46 9e-05
SB_30311| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-04
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0) 32 1.5
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.0
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13) 32 2.0
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44) 31 4.5
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.5
SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07) 30 7.9
>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
Length = 1076
Score = 94.3 bits (224), Expect = 3e-19
Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 39/327 (11%)
Query: 392 SHGENSISYKKGAGGIRNSNTVEFVVQWTFDTGKCVDASP-------------------- 431
SH + +SY +G + TV+ +W + KC DASP
Sbjct: 728 SHSD-CVSY---SGRRLGNRTVQLSKKWRANLYKCTDASPLVVGCRVADLDSTEKGSGEA 783
Query: 432 ALYKSESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRIEAPILCVHDECVTSPCGVVG 491
AL+ ES L V VGSH+ M + G + ++ RIE+ V C T C + G
Sbjct: 784 ALFHVESGL-VYVGSHAHVFKAMRLSDGEVMWETEVGDRIESS--AVLSRCGT--CIIFG 838
Query: 492 TYDGTVICFLLENCSVIWQINVGSMIKSKATY--CKGVLYIASYDGNIRCIDILTSTIKE 549
YDG + + + W + +KS G++++ S+D ++ +DI
Sbjct: 839 CYDGKIYIINRFSGVIGWTYQTHAPVKSSPCVDPTTGLVWVGSHDHHLYALDITNRVSAC 898
Query: 550 TVHVSDQAISADLVLAKNEFILFGTLSGVCACLHVNTKTIIWQGSLKGPIFACPVLYDND 609
+ S+ + E + TLSGV C++ + I W P+FA P++ D
Sbjct: 899 AIDCGGSCFSSPRLNPTWERLFAATLSGVLLCINTSDMMIDWSTKCPKPVFASPLV--TD 956
Query: 610 KYVIFAEVNGEIHCRTVEKGIKIWTYNGAKGNIFSS-LCVKEINKFKWQMYFGCHDNNVY 668
V+ V+G ++ + G +W+ G IFSS + + + + + FGCHD++VY
Sbjct: 957 VGVVCGCVDGYLYAFDL-SGAPLWSL-ATSGPIFSSPVLARRRSLCQEAIVFGCHDSHVY 1014
Query: 669 SVNITNFQPSLHWKTRVSSPVYSTPTI 695
V+ + L W + SP+YSTP I
Sbjct: 1015 CVST---RGELEWSFKADSPIYSTPFI 1038
Score = 54.8 bits (126), Expect = 2e-07
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 560 ADLVLAKNEFILFGTLSGVCACLHVNTKTIIWQGSLKGPIFACPVLYDNDKYVIFAEVNG 619
A L ++ + G+ + V + ++ ++W+ + I + VL +IF +G
Sbjct: 783 AALFHVESGLVYVGSHAHVFKAMRLSDGEVMWETEVGDRIESSAVLSRCGTCIIFGCYDG 842
Query: 620 EIHCRTVEKGIKIWTYNGAKGNIFSSLCVKEINKFKWQMYFGCHDNNVYSVNITNFQPSL 679
+I+ G+ WTY + SS CV W G HD+++Y+++ITN +
Sbjct: 843 KIYIINRFSGVIGWTYQ-THAPVKSSPCVDPTTGLVW---VGSHDHHLYALDITNRVSAC 898
Query: 680 HWKTRVSSPVYSTPTIFND-KLILAASTDGKLWVIHSELGTVTAQYQLPGETFSSPIICD 738
+S+P + + + AA+ G L I++ + + P F+SP++ D
Sbjct: 899 --AIDCGGSCFSSPRLNPTWERLFAATLSGVLLCINTSDMMIDWSTKCPKPVFASPLVTD 956
Query: 739 DHVFIGCRNDLLYSLKI 755
V GC + LY+ +
Sbjct: 957 VGVVCGCVDGYLYAFDL 973
Score = 41.9 bits (94), Expect = 0.002
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 117 DKEVPLGNCLSETELFVQPHEK---NNTMGKIILASKTRKCILLNRKNGNKEENSIKFID 173
D+ +P+G L +T + ++ E ++ +G++ + R C L N + +
Sbjct: 291 DERIPIGEPLQDTLVDIRDEEGKKISHGIGQMYIGGHNRICFL----NNEMDVSPGTMRA 346
Query: 174 TGDIGEIRNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQ-CPRVRSCSCV--------- 223
+GD I N +++ GR D IKR G + NL IE + + PR + V
Sbjct: 347 SGDWALINNDQIWFLGRKDRQIKRLGQRTNLLWIEQALARVLPRHTFVAVVVKSKVSSEQ 406
Query: 224 -WLQTP----LLLIVYFSAETLS---SQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGK 275
Q P L L V S ++ S S + +K L PD + V LP +HGK
Sbjct: 407 QMFQLPKMDRLHLFVTSSDDSSSWDLSFRVRSIIKDVLPVHAHPDHIHIVSDLPLTSHGK 466
Query: 276 TSKEILV 282
E L+
Sbjct: 467 VDMETLL 473
>SB_37163| Best HMM Match : PQQ (HMM E-Value=0)
Length = 419
Score = 62.5 bits (145), Expect = 1e-09
Identities = 67/338 (19%), Positives = 140/338 (41%), Gaps = 23/338 (6%)
Query: 426 CVDASPALYKSESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRI-EAPILCVHDECVT 484
CV P Y E +LY+ GS G + + G + +I +P L E
Sbjct: 62 CVVEDPRSY--EPLLYI--GSEDGNLYAIGVLYGDQRWKFTTDGKILSSPALSTDGETAV 117
Query: 485 SPCGVVGTYDGTVICFLLENCSVIWQINVGS-MIKSKATYCKGVLYIASYDGNIRCIDIL 543
+ G+ DG + + ++W G ++ G++Y+ S+D + +D +
Sbjct: 118 ----IFGSNDGRIYALSPSSGKLLWNFQTGGGVVAGPVITANGIVYVGSHDHQLYALDAV 173
Query: 544 TSTIKETVHVSDQAISADLVLAKNEFILF-GTLSGVCA-CLHVNTK--TIIWQGSLKGPI 599
+ + ++ I A + + + + LF G + A L +++K +++W+ + G I
Sbjct: 174 SGALHWKTSLTGP-IYARVAVDETQGTLFVGCAADDSARILTLSSKDGSVLWKFADAGKI 232
Query: 600 FACPVLYDNDKYVIFAEVNGEIHCRTVEKGIKIWTYNGAKGNIFSSLCVKEINKFKWQMY 659
FA PVL + K V F ++ ++ + G +W+ + + I S+ I+K ++
Sbjct: 233 FANPVLSADKKTVYFCSLDRHVYALESKSGNLLWSLD-TQSEIESA---PVISKSDGTLF 288
Query: 660 FGCHDNNVYSVNIT--NFQPSLHWKTRVSSPVYSTPTIFNDKLILAASTDGKLWVIHSEL 717
G N+ +VN ++ W + +P + D + D ++ ++
Sbjct: 289 VGLVSGNLLAVNTLPGPLMGTVKWTLKAGDEAVFSPALSEDSRLFVGVGDRRILAVNETT 348
Query: 718 GTVTAQYQLPGETFSSPIIC--DDHVFIGCRNDLLYSL 753
G + + SSP+ D+ V+ R+ +Y+L
Sbjct: 349 GDILWSSSFMKDYVSSPLGVGRDNVVYAASRDSHVYAL 386
Score = 46.4 bits (105), Expect = 9e-05
Identities = 63/291 (21%), Positives = 123/291 (42%), Gaps = 23/291 (7%)
Query: 391 SSHGENSISYKKGAGGIRNSNTVEFVVQWTFDTGKCVDASPALYKSESVLYVTVGSHSGK 450
S+ GE ++ + G I + + W F TG V A P + + ++Y VGSH +
Sbjct: 110 STDGETAVIFGSNDGRIYALSPSSGKLLWNFQTGGGVVAGPVI-TANGIVY--VGSHDHQ 166
Query: 451 IVVMNANTGFIQGLIKLKSRIEAPILCVHDECVTSPCGVVGTYDGTVICFLLENCSVIWQ 510
+ ++A +G + L I A + V + T G ++ ++ SV+W+
Sbjct: 167 LYALDAVSGALHWKTSLTGPIYARV-AVDETQGTLFVGCAADDSARILTLSSKDGSVLWK 225
Query: 511 I-NVGSMIKSKATYC-KGVLYIASYDGNIRCIDILTSTIKETVHVSDQAISADLVLAKNE 568
+ G + + K +Y S D ++ ++ + + ++ + SA ++ +
Sbjct: 226 FADAGKIFANPVLSADKKTVYFCSLDRHVYALESKSGNLLWSLDTQSEIESAPVISKSDG 285
Query: 569 FILFGTLSGVCACLHVNTKTIIWQGSLKGPIFA------CPVLYDNDKYVIFAEVNGEIH 622
+ G +SG L VNT G++K + A P L ++ + +F V G+
Sbjct: 286 TLFVGLVSG--NLLAVNTLPGPLMGTVKWTLKAGDEAVFSPALSEDSR--LFVGV-GDRR 340
Query: 623 CRTVEK--GIKIWTYNGAKGNIFSSLCVKEINKFKWQMYFGCHDNNVYSVN 671
V + G +W+ + K + S L V N +Y D++VY++N
Sbjct: 341 ILAVNETTGDILWSSSFMKDYVSSPLGVGRDN----VVYAASRDSHVYALN 387
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 59.7 bits (138), Expect = 9e-09
Identities = 67/318 (21%), Positives = 133/318 (41%), Gaps = 24/318 (7%)
Query: 436 SESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRIEAPILCVH--DECVTSPCGVVGTY 493
S++ LYV+ S I ++A TG + + K + + +C DE V CG T
Sbjct: 1484 SDATLYVS--SDDQVIYALDAKTGDL--MWKYGTAEDGGSMCAFSPDETVLY-CG---TD 1535
Query: 494 DGTVICFLLENCSVIWQINV-GSMIKSKATYCKGVLYIASYDGNIRCIDILTSTIKETVH 552
D + F + +++W+ G++ S G L++ DG+I CI T+K H
Sbjct: 1536 DNFIRAFNRLDGTLLWKFKTEGAVTSSTRVGTDGTLFVGCVDGHIYCIKP-DGTLKWKKH 1594
Query: 553 VSDQAISADLVLAKNEFILFGTLSGV---CACLHVNTKTIIWQGSLKGPIFACPVLYDND 609
+ DQ + + + +++ L T ++WQ GP+FA P L ++
Sbjct: 1595 LGDQVWATPALQDGGRVVFIASMAQEPHNVFALQGETGEVLWQRLTGGPVFASPALSADE 1654
Query: 610 KYVIFAEVNGEIHCRTVEKGIKIWTYNGAKGNIFSSLCVKEINKFKWQMYFGCHDNNVYS 669
V + + G +W + A + SS ++K + M+ + N++
Sbjct: 1655 STVYVCSFDANCYAYESATGKIMWVFE-ADASFQSS---PALSKSRGLMFVTSTEGNMFC 1710
Query: 670 VNITNFQPSLHWKTRVSSPVYSTPTIFNDKLILAASTDGKLWVIHSELGTVTAQYQLPGE 729
V +++ + W + +ST + D + S G + ++ G++ ++ +
Sbjct: 1711 VRLSD--GKIQWIHKSKGEFFSTAFVAADNRVYVGSGTGNVLALNQSDGSLIWSFKTETD 1768
Query: 730 --TFSSP-IICDDHVFIG 744
+SSP + D ++IG
Sbjct: 1769 DMVYSSPKMTKDGTLYIG 1786
Score = 44.0 bits (99), Expect = 5e-04
Identities = 60/304 (19%), Positives = 114/304 (37%), Gaps = 18/304 (5%)
Query: 417 VQWTFDTGKCVDASPALYKSESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRIEAPIL 476
+ W + T + + A E+VLY G+ I N G + K + + +
Sbjct: 1507 LMWKYGTAEDGGSMCAFSPDETVLYC--GTDDNFIRAFNRLDGTLLWKFKTEGAVTSSTR 1564
Query: 477 CVHDECVTSPCGVVGTYDGTVICFLLENCSVIWQINVGSMIKSKATYCKG--VLYIASYD 534
D + VG DG + C + ++ W+ ++G + + G V++IAS
Sbjct: 1565 VGTDGTL-----FVGCVDGHIYCIKPDG-TLKWKKHLGDQVWATPALQDGGRVVFIASMA 1618
Query: 535 GNIRCIDILTSTIKETV--HVSDQAISADLVLAKNEFILFG-TLSGVCACLHVNTKTIIW 591
+ L E + ++ + A L+ +E ++ + C T I+W
Sbjct: 1619 QEPHNVFALQGETGEVLWQRLTGGPVFASPALSADESTVYVCSFDANCYAYESATGKIMW 1678
Query: 592 QGSLKGPIFACPVLYDNDKYVIFAEVNGEIHCRTVEKGIKIWTYNGAKGNIFSSLCVKEI 651
+ P L + + G + C + G W + +KG FS+ V
Sbjct: 1679 VFEADASFQSSPALSKSRGLMFVTSTEGNMFCVRLSDGKIQWIHK-SKGEFFSTAFVAAD 1737
Query: 652 NKFKWQMYFGCHDNNVYSVNITNFQPSLHWKTRVSSPVYSTPTIFNDKLILAASTDGKLW 711
N+ +Y G NV ++N ++ +KT VYS+P + D + K++
Sbjct: 1738 NR----VYVGSGTGNVLALNQSDGSLIWSFKTETDDMVYSSPKMTKDGTLYIGGGVYKIF 1793
Query: 712 VIHS 715
H+
Sbjct: 1794 KEHN 1797
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 46.4 bits (105), Expect = 9e-05
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 32/300 (10%)
Query: 62 LKVLALGGEPLNGIKILKELKHKNNKTRIFTLYGVTEMSCWASVAELDLNKVTTGDKEVP 121
LK++ LGGE ++L + + YG TE + A+ E+ K T +
Sbjct: 294 LKLIILGGEACG-----EDLVAWADGRMLINSYGPTETTVVATTCEIKRGKKITIGRA-- 346
Query: 122 LGNCLSETELFVQPHEKNNTMGKIILASKTRKCILLNRKNGNKEENSIKFID-------- 173
GN + + + G++ ++ K C+ +N E+ +F+D
Sbjct: 347 FGNYNAHILDSILVDVEGEKEGELCISGK---CLARGYRN-LPEKTKQQFVDHQLHGRIY 402
Query: 174 -TGDIGE-IRNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQ-TP-- 228
TGD+ +G + Y GR+DD +K G ++ + SIE+ + + V+ + V L +P
Sbjct: 403 RTGDLVRWTPDGEIEYLGRIDDQVKIRGFRVEIGSIETHLQRQENVKMAAVVVLSPSPGQ 462
Query: 229 LLLIVYFS----AETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNI 284
L++ + + + +Q+ + +K L E P+ I + LPT A GK K+ L +
Sbjct: 463 QLVVAHLTLVDKTKGFQAQQAVVKMKIALPEYMIPNGYIIHEELPTLASGKVDKKKLKTL 522
Query: 285 YKKSNILQNVENIKSYLFKELKALV----NKDLNYEDLQSKSFFSLGGTSFLAVTICNKL 340
E + + + + +K N + ++FF LGG S +A + +++
Sbjct: 523 DTPPQSFNASEKYTAPRDETERIICSIWESKLCNPKISTDENFFELGGQSVVAALVISEM 582
>SB_30311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 44.0 bits (99), Expect = 5e-04
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 158 NRKNGNKEE-NSIKFIDTGDIGEIRNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQCPR 216
NR KE + TGD + +G GR D IK G+KI+ +E + Q P
Sbjct: 78 NRPEATKESFTEDGWFITGDTARLSDGVYRIIGRPWDIIKSGGYKISALEVERELRQHPD 137
Query: 217 VRSCSCV------WLQTPLLLIVYFSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPT 270
V+ C+ + W + ++ L+ ++L + + + P + V+ LP
Sbjct: 138 VKDCAVLGIPDPEWGERVAAIVALNDNSALTLEDLRAWGSDHMVRYHIPAALHIVEELPR 197
Query: 271 NAHGKTSKEILVNIYKK 287
N GK +K+ L + Y K
Sbjct: 198 NVMGKVNKKELYSAYFK 214
>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 445
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 174 TGDIGEIRN-GTVFYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCV 223
+GD G + N G +F GR DD I GH+++ +E V V C+ +
Sbjct: 354 SGDGGMLDNDGYLFVLGRTDDIINVAGHRLSTGEMEEVVAGHDAVAECAVI 404
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 31.9 bits (69), Expect = 2.0
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 157 LNRKNGNKEENSIKFIDTGDIGEIRNGTVFYRGRVDDTIKRFGHKINLHSIESTVM 212
L+R+N +++NS+K + T + + T R ++DD I H +++ ES ++
Sbjct: 1023 LSRRNNEEDKNSVKMVVTQKV-PVDEETDMIRLKIDDNIDVGSHTVSIDGSESALI 1077
>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
Length = 874
Score = 31.9 bits (69), Expect = 2.0
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 91 FTLYGVTEMSCWASVAELDLNKVTTGDKEVPLGNCLSETELFVQPHEKNNTMGKIILASK 150
++ YG+TE+S + V LD + +P C +L + G+I +
Sbjct: 181 YSSYGMTELSPVSHVVPLDTYNPKSVGVLLPNLEC-KIIDLSSGEEVEQGKEGEICIRGP 239
Query: 151 T-RKCILLNRKNGNKEENSIKFIDTGDIGEIRNGTVFY-RGRVDDTIKRFGHKIN-LH 205
T K L N + + +S ++ TGDIG G FY R+ + IK G +++ LH
Sbjct: 240 TVMKGYLKNPEATARTLDSEGWLHTGDIGHCDQGDFFYITDRLKELIKYKGFQVSALH 297
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 31.5 bits (68), Expect = 2.6
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 427 VDASPALYKSESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRIEAPILCVHDECVTSP 486
VD + +S + T GSHSGK+ ++N G + + + + + D +
Sbjct: 65 VDTWTVTFSPDSKILAT-GSHSGKVNLINLELGKKESSLDTRGKFTMSLAYSPDGHYIA- 122
Query: 487 CGVVGTYDGTVICFLLENCSVIWQINVGSMIKSKATYC--KGVLYIASYDGNIRCIDILT 544
CG + DG + F L ++ + +M T+ +L AS DG+I+ D+
Sbjct: 123 CGAI---DGIINIFDLTTNKLLHTLEGHAMPIRSLTFSPDSQLLITASDDGHIKMYDVYP 179
Query: 545 S 545
S
Sbjct: 180 S 180
>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
Length = 393
Score = 30.7 bits (66), Expect = 4.5
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 171 FIDTGD-IGEIRNGTVFYRGRVDDTIKRFGHKINLHSIES-----------TVMQCPRVR 218
+ TGD NG + GR DD + GH ++ IES V+ CP
Sbjct: 236 YYTTGDGCKRDENGYYWVTGRTDDCMNVSGHLLSTAQIESALVEHDAVSEAAVVSCPHKE 295
Query: 219 SCSCVWLQTPLLLIVYFSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSK 278
++ L+ V + + +EL ++ K+ PD + LP GK +
Sbjct: 296 KGEGIYCFATLMENVELDEKLI--RELKQKVRLKIGPFASPDVIQSAPALPKTRSGKIMR 353
Query: 279 EILVNIYK 286
+L + K
Sbjct: 354 RVLRQVAK 361
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 4.5
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 599 IFACPVLYDNDKYVIFAEVNGEIHCRTVEKGIKIWTY--NGAKGNIFSSLCVKEINKFKW 656
+ CP Y N V ++ N + GI ++ N + N++ + C N W
Sbjct: 520 VSGCPNNYVNTGMV--SKCNETASNSDLVSGIPVFDMRSNVSYRNVYCASCNAATNLSYW 577
Query: 657 QMYFGCHDNNVYSVNITNFQPSLHWKTRVSSPVYSTPTIFNDKLI 701
Q+ C D++ S N T + + + R + Y T F D+L+
Sbjct: 578 QLSIKCDDSSGISANTTTAE-LMEYARRSCALAYKPRTEFWDRLL 621
>SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07)
Length = 458
Score = 29.9 bits (64), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 39 TPSKFFQHSNENIKNKILCARSTLKVLALGGEPLNGIKILKELKHKNNKTRIFTLYGVTE 98
TP K+ H+ I+N I S LK++ LGGE +L + N+ F Y T+
Sbjct: 280 TPGKYHLHA---IRNDIFLDASFLKIIVLGGELTASCSDEDKLPYGVNQAGPFIAYTTTD 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,107,006
Number of Sequences: 59808
Number of extensions: 1127269
Number of successful extensions: 2556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2513
Number of HSP's gapped (non-prelim): 23
length of query: 758
length of database: 16,821,457
effective HSP length: 88
effective length of query: 670
effective length of database: 11,558,353
effective search space: 7744096510
effective search space used: 7744096510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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