Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001041-TA|BGIBMGA001041-PA|IPR000873|AMP-dependent
synthetase and ligase, IPR002372|Pyrrolo-quinoline quinone,
IPR011047|Quinonprotein alcohol dehydrogenase-like, IPR009081|Acyl
carrier protein-like, IPR006163|Phosphopantetheine-binding
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 91 2e-18
At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase fam... 52 1e-06
At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) simil... 50 4e-06
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t... 48 2e-05
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil... 47 4e-05
At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase fam... 47 4e-05
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil... 39 0.011
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam... 38 0.025
At5g58740.1 68418.m07358 nuclear movement family protein contain... 35 0.23
At4g19010.1 68417.m02802 4-coumarate--CoA ligase family protein ... 34 0.30
At2g28600.1 68415.m03476 expressed protein 33 0.70
At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative / aceta... 32 1.2
At1g79570.1 68414.m09276 protein kinase family protein low simil... 31 2.8
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 31 3.7
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 3.7
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta... 31 3.7
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta... 31 3.7
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 3.7
At5g24740.1 68418.m02920 expressed protein 30 6.5
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 6.5
At5g37110.1 68418.m04454 hypothetical protein 29 8.6
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 8.6
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 29 8.6
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 91.1 bits (216), Expect = 2e-18
Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 39/367 (10%)
Query: 419 WTFDTGKCVDASPALYKSESVLYVTVGSHSGKIVVMNANTGFIQGLIKLKSRIEAPILCV 478
W CVDASP + +S Y+ +GSHS K ++A +G + L+ RIE + V
Sbjct: 683 WKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGSAMVV 742
Query: 479 HDECVTSPCGVVGTYDGTVICFLLENCSVIWQINVGSMIKSKATY--CKGVLYIASYDGN 536
D V+G Y G + S+ W+ IK + +++ S+D
Sbjct: 743 GDFSQV----VIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHT 798
Query: 537 IRCIDILTSTIKETVHVSDQAISADLVLAKNEFILFGTLSGVCACLHVNTKTI--IWQGS 594
+ +D + + ++ + + + + SG + + +W
Sbjct: 799 LYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFE 858
Query: 595 LKGPIFACPVLYDNDKYVIFAEVNGEIHCRTVEKGIKIWTYNGAKGNIFSSLCVKEINKF 654
L+ PIF + + + VI V+G++ + G IW Y G IF+ C+ +
Sbjct: 859 LEAPIFGSLCITPSTQNVICCLVDGQVIAMS-PSGTIIWRYR-TGGPIFAGPCMSHV--L 914
Query: 655 KWQMYFGCHDNNVYSVNITNFQPSLHWKTRVSSPVYSTPTI------------FNDKLIL 702
Q+ C + VYS+ + L W+ + P+ ++ I +D+L+
Sbjct: 915 PSQVLVCCRNGCVYSLEPES--GCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVT 972
Query: 703 AASTDGKLWVIH------------SELGTVTAQYQLPGETFSSPIICDDHVFIGCRNDLL 750
S+ G++ V+ S++G +T + +L + FSSP++ +F+GCR+D +
Sbjct: 973 VCSSSGRVHVLRVRPSILSRDSHDSKVGEIT-RMELQADIFSSPVMIGGRIFVGCRDDYV 1031
Query: 751 YSLKIDT 757
+ L +++
Sbjct: 1032 HCLSLES 1038
Score = 54.4 bits (125), Expect = 3e-07
Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 38/330 (11%)
Query: 45 QHSNENIKNKILCARSTLKVLALGGEPLNGIKILKELKHKNNKTRIFTLYGVTEMS--C- 101
QH N NK+ +S LK++ L GEP + + L +T LYG TE+S C
Sbjct: 213 QHRGHN--NKL---QSCLKLVVLSGEPFP-VSLWDSLHSLLPETCFLNLYGSTEVSGDCT 266
Query: 102 WASVAELDLNKVTTGDKEVPLGNCLSETELFV-----QPHEKNNTMGKIILASKTRKCIL 156
+ +EL T VP+G +S ++ + +P+E + + L+ +
Sbjct: 267 YFDCSELPRLLKTEEIGSVPIGKSISNCKVVLLGDEDKPYEGEICVSGLCLSQGYMHSSI 326
Query: 157 LNRKNGNKEENSI-----------KFIDTGDIG-EIRNGTVFYRGRVDDTIKRFGHKINL 204
+ NS+ + TGD G ++ +G + + GR D T+K G ++ L
Sbjct: 327 ESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGKRMAL 386
Query: 205 HSIESTVMQCPRVRSCSCVWLQ-----TPLLLIVYFSAETLSSQELL----DFLKCKLDE 255
IE+T+ P + + + L V + E+ SS ++ +++ KL
Sbjct: 387 EEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGGKLPP 446
Query: 256 KYWPDKVIRVDTLPTNAHGKTSKEILVNIYKKSNILQNV--ENIKSYLFKELKALVNKDL 313
P+ + V+ LP + GK E L + + Q++ N + L + +K V L
Sbjct: 447 VMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKAVCDAL 506
Query: 314 NYEDL-QSKSFFSLGGTSFLAVTICNKLSL 342
+++ FF++GG S A + + L +
Sbjct: 507 LVKEVSDDDDFFAIGGDSLAAAHLSHSLGI 536
>At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 535
Score = 52.0 bits (119), Expect = 1e-06
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 127 SETELFVQPHEKNNTMGKIILASKTRKCILLNRKNGNKEENSIKFIDTGDIGEIR-NGTV 185
+ET+ V PH+ TMG+I++ L E +++TGD+G I +G +
Sbjct: 349 NETQESV-PHD-GKTMGEIVMKGNNIMKGYLKNSKATFEAFKHGWLNTGDVGVIHPDGHI 406
Query: 186 FYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVYFSAET 239
+ R D I G I+ +E+ + + PRV + V W +TP IV ET
Sbjct: 407 EIKDRSKDIIISGGENISSVEVENILYKHPRVFEVAVVAMPHRVWGETPCAFIVLQKGET 466
Query: 240 ----------LSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYK 286
+EL+D+ + L P KV+ ++ LP N +GK K L I K
Sbjct: 467 NKEDDEYKFVAREKELIDYCRENLPHFMCPRKVVFLEELPKNGNGKILKPNLRAITK 523
>At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) similar
to AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA acyl-activating enzyme 12 (At1g65890) mRNA
GI:29893228, acyl-activating enzyme 12 [Arabidopsis
thaliana] GI:29893229
Length = 578
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 141 TMGKIIL-ASKTRKCILLNRKNGNKEENSIKFIDTGDIGEIR-NGTVFYRGRVDDTIKRF 198
TMG+I++ S K L N K E ++++GD+G I +G V + R D I
Sbjct: 391 TMGEIVMKGSSIMKGYLKNPK-ATYEAFKHGWLNSGDVGVIHPDGHVEIKDRSKDIIISG 449
Query: 199 GHKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVYFSAET----------LSS 242
G I+ +E+ + + P+V + V W +TP +V ET
Sbjct: 450 GENISSVEVENIIYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKE 509
Query: 243 QELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYKKSNILQNVENIKS 299
++L+++ + L P KV+ +D LP N +GK K L +I K + ++ N++S
Sbjct: 510 RDLIEYCRENLPHFMCPRKVVFLDELPKNGNGKILKPKLRDI-AKGLVAEDEVNVRS 565
>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
adenosine monophosphate binding protein 6 AMPBP6
(AMPBP6) GI:20799720
Length = 550
Score = 48.0 bits (109), Expect = 2e-05
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 137 EKNN-TMGKIILASKTRKCILLNRKNGNKEENSIKFIDTGDIGEIRN-GTVFYRGRVDDT 194
E+N T+G+I++ + L G ++ + TGD+G I + G + + R D
Sbjct: 383 ERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNGWFYTGDVGVIHSDGYLEIKDRSKDI 442
Query: 195 IKRFGHKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVY---FSAETLSSQEL 245
I G ++ +E+ + P V + V W +TP + FS + + +EL
Sbjct: 443 IITGGENVSSVEVETVLYTIPAVNEVAVVARPDEFWGETPCAFVSLKNGFSGKP-TEEEL 501
Query: 246 LDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYKK 287
+++ + K+ + P V +D LP ++ GK +K +L +I KK
Sbjct: 502 MEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFVLRDIAKK 543
>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
to AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
acyl-activating enzyme 11 [Arabidopsis thaliana]
GI:29893231
Length = 572
Score = 47.2 bits (107), Expect = 4e-05
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Query: 141 TMGKIILASKTRKCILLNRKNGNKEENSIKFIDTGDIGEIR-NGTVFYRGRVDDTIKRFG 199
TMG+I++ + L E +++TGDIG I +G V + R D I G
Sbjct: 391 TMGEIVIKGSSLMKGYLKNPKATSEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGG 450
Query: 200 HKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVYFSAE---TLSSQELLDFLK 250
I+ +E + V + V W +TP +V E S +L+ + +
Sbjct: 451 ENISSIEVEKVLYMYQEVLEAAVVAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCR 510
Query: 251 CKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYK 286
+ P KV+ LP N++GK K L +I K
Sbjct: 511 ENMPHFMCPKKVVFFQELPKNSNGKILKSKLRDIAK 546
>At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 580
Score = 47.2 bits (107), Expect = 4e-05
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 141 TMGKIIL-ASKTRKCILLNRKNGNKEENSIKFIDTGDIGEIR-NGTVFYRGRVDDTIKRF 198
TMG+I++ S K L N K E +++TGD+G I +G V + R D I
Sbjct: 391 TMGEILIKGSSIMKGYLKNPK-ATFEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISG 449
Query: 199 GHKINLHSIESTVMQCPRVRSCSCV------WLQTPLLLIVYFSAETLSSQE-------- 244
G I+ +E+ + + P+V + V W +TP +V +ET ++
Sbjct: 450 GENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTR 509
Query: 245 ---LLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYK 286
L+++ + L P KV+ ++ LP N +GK K L +I K
Sbjct: 510 ERNLIEYCRENLPHFMCPRKVVFLEELPKNGNGKILKPKLRDIAK 554
>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
to malonyl CoA synthetase GB:AAF28840 from
[Bradyrhizobium japonicum]; contains Pfam AMP-binding
enzyme domain PF00501; identical to cDNA acyl-activating
enzyme 13 (At3g16170) GI:29893232, acyl-activating
enzyme 13 [Arabidopsis thaliana] GI:29893233
Length = 544
Score = 39.1 bits (87), Expect = 0.011
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 122 LGNCLSETELFVQPHEKN-NTMGKIILASKTRKCILLNRKNGNKEE-NSIKFIDTGDIGE 179
+G L E ++ E + N +G+I + S + N KE + TGD G
Sbjct: 357 VGKPLPGVEAKIKEDENDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAGR 416
Query: 180 I-RNGTVFYRGRVD-DTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLL 231
+ +G GR D +K G+K++ IEST+++ P V C + L + +
Sbjct: 417 VDEDGYYVILGRNSADIMKVGGYKLSALEIESTLLEHPTVAECCVLGLTDNDYGEAVTAI 476
Query: 232 IVYFSA----------ETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEIL 281
I+ SA ++ +EL + K KL P +++ ++LP NA GK +K+ L
Sbjct: 477 IIAESAAKKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGKVNKKEL 536
>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
protein similar to peroxisomal-coenzyme A synthetase
(FAT2) [gi:586339] from Saccharomyces cerevisiae;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA; identical to cDNA adenosine
monophosphate binding protein 3 AMPBP3
(AMPBP3)GI:20799714
Length = 514
Score = 37.9 bits (84), Expect = 0.025
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%)
Query: 137 EKNNTMGKIILASKTRKCILLNRKNGNKEENSIKFIDTGDIGEI-RNGTVFYRGRVDDTI 195
++ N G++ + N NK + TGDIG +G + GR+ + I
Sbjct: 355 QEPNNKGEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELI 414
Query: 196 KRFGHKINLHSIESTVMQCPRVRSCSCVWL------QTPLLLIVYFSAETLSSQELLDFL 249
R G KI+ +++ ++ P V + + ++ T++ +++ F
Sbjct: 415 NRGGEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFC 474
Query: 250 KCKLDEKYWPDKVIRVDTLPTNAHGKTSKEIL 281
K L P +V D LP A GK + I+
Sbjct: 475 KKNLAAFKVPKRVFITDNLPKTASGKIQRRIV 506
>At5g58740.1 68418.m07358 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 158
Score = 34.7 bits (76), Expect = 0.23
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 654 FKWQMYFGCHDNNVYSVNITNFQP-SLHWKTR---VSSPVYSTPTIFNDKLILAASTDGK 709
F+W + N+Y N P S H K + + + P N L TD
Sbjct: 21 FEWDQTL--EEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKGNPPYLNHDLSAPVKTDCS 78
Query: 710 LWVIHSELGTVTAQYQLPGETFSSPII 736
W + ++ +T Q + G+T++SPI+
Sbjct: 79 FWTLEDDIMHITLQKREKGQTWASPIL 105
>At4g19010.1 68417.m02802 4-coumarate--CoA ligase family protein /
4-coumaroyl-CoA synthase family protein similar to 4CL
from Pinus taeda, gi:515503, gi:1143308; contains Pfam
AMP-binding enzyme domain PF00501
Length = 566
Score = 34.3 bits (75), Expect = 0.30
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 171 FIDTGDIGEI-RNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWL---- 225
++ TGDI +G +F R+ + IK G +I +E+ ++ P + +
Sbjct: 437 WLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEE 496
Query: 226 --QTPLLLIVYFSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVN 283
+ P+ +V TLS ++++ ++ ++ KV+ V+++P + GK ++ L
Sbjct: 497 CGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKR 556
Query: 284 IYKKS 288
I S
Sbjct: 557 ILTNS 561
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 33.1 bits (72), Expect = 0.70
Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 6/166 (3%)
Query: 50 NIKNKILCARSTLKVLALGGEPLNGIKILKELKHKNNKTRIFT-LYGVTEMSCWASVAEL 108
+I N L L L GG LN +K +K+ ++T +F + + + S
Sbjct: 267 DISNVSLLVIDELGSLCSGGY-LNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGG 325
Query: 109 DLNKVTTGDKEVPLGNCLSETELFVQPHEKN-NTMGKIILASKTRKCILLNRKNGNKEEN 167
+N+VT + G+C+++T EK K + +S ++ ++ ++ K+
Sbjct: 326 SVNRVTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSSSKLIYIVTKEESFKKIM 385
Query: 168 SIKFIDTGDIGEIRNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQ 213
+I + + + + V + K H I+ +++TVM+
Sbjct: 386 AILKLKGISVSTSSDSKL---SEVKKSRKPVAHLIDFEQLDTTVMR 428
>At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative /
acetate-CoA ligase, putative similar to SP|P27550
(Escherichia coli) and gi:8439651 (Homo sapiens);
contains Pfam AMP-binding enzyme domain PF00501
Length = 693
Score = 32.3 bits (70), Expect = 1.2
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 181 RNGTVFYRGRVDDTIKRFGHKINLHSIESTVMQCPRVRSCSCVWLQ-----------TPL 229
++G + GRVDD I GH+I +ES ++ P+ + V ++ L
Sbjct: 552 KDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGIYAFVTL 611
Query: 230 LLIVYFSAETLSSQELLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNI 284
L V +S E S L+ ++ ++ PD++ LP GK + IL I
Sbjct: 612 LEGVPYSEELRKSLVLM--VRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKI 664
>At1g79570.1 68414.m09276 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 31.1 bits (67), Expect = 2.8
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 54 KILCARSTLKVLALGGEPLNGIKILKELKHKNNKTRIFTLYGVTEMSCWASVAELDLNKV 113
KIL K+ +GGE + I I K++ + + +I +Y T + + E DL+ +
Sbjct: 186 KILPRPGDSKLRYVGGET-HIISIRKDISWQELRQKILEIYYQTRVVKYQLPGE-DLDAL 243
Query: 114 TTGDKEVPLGNCLSE-TELFVQPHEKNNTMGKIILASKTRKCILLNRKNGNKEENSIKFI 172
+ E L N L E E+ + + M ++ + +N+ +G+ E + +
Sbjct: 244 VSVSSEEDLQNMLEEYNEMENRGGSQKLRMFLFSISDMDDALLGVNKNDGDSEFQYVVAV 303
Query: 173 DTGDIGEIRNGTV 185
+ DIG +N T+
Sbjct: 304 NGMDIGSGKNSTL 316
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 30.7 bits (66), Expect = 3.7
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 20/195 (10%)
Query: 514 GSMIKSKATYCKGVLYIASYDGNIRCIDILTSTIKETVHVSDQAISADLVLAKNEFILFG 573
GS + Y KG+L+ DG+IR + V+ + D+ K+ F
Sbjct: 852 GSGAVTALIYHKGLLFSGFSDGSIRVWN---------VNKKIATLLWDIKEHKSTVTCFS 902
Query: 574 -TLSGVCACLHVNTKTI-IWQGSLKGPIFACPVLYDNDKYVIFAEVNGEIHCRTVEKGIK 631
+ +G C KTI +WQ +KG + V+ D I T +K
Sbjct: 903 LSETGECVLSGSADKTIRVWQ-IVKGKLECAEVIKTKDSIRKLEAFGNMIFVITKGHKMK 961
Query: 632 IWTYNGAKGNIFSSLCVKEINKFKWQMYFGCHDNNVYSVNITNFQ------PSLHWKTRV 685
+ + +IF VK + + ++Y GC D ++ + + N + P+ W+ +
Sbjct: 962 LLDSSRISQSIFKGKGVKSMVSAQGKIYIGCIDTSIQELIVANKREKEIKAPTRSWRLQ- 1020
Query: 686 SSPVYSTPTIFNDKL 700
+ P+ S ++ D L
Sbjct: 1021 NKPINSV-VVYKDML 1034
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 3.7
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 245 LLDFLKCKLDEKYWPDKVIRVDTLPTNAHGKTSKEILVNIYKKSNILQNVENIKSYLFKE 304
LL+ + C +++K + D G + E+L+N+ + S L + ++SYLF++
Sbjct: 597 LLNIVGCSIEDKASDGGCMLQDE---GRPGHVAFELLLNLLR-SRALSDF--LESYLFQQ 650
Query: 305 LKALVNKDLNYED 317
+ + N D NY D
Sbjct: 651 ILVVENSDFNYND 663
>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 416
Score = 30.7 bits (66), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 315 YEDLQSKSFFSLGGTSFLAVTICNKLSLTFPEVGKHILPHLL 356
Y DL+ SL +++ + N + +++P+V HILP L
Sbjct: 49 YTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKL 90
>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 316
Score = 30.7 bits (66), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 315 YEDLQSKSFFSLGGTSFLAVTICNKLSLTFPEVGKHILPHLL 356
Y DL+ SL +++ + N + +++P+V HILP L
Sbjct: 49 YTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKL 90
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 30.7 bits (66), Expect = 3.7
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 347 VGKHILPHLLSHNKSIGDVLKTITQDTNCLENKFKKSIKRNRSTSSHGENSISYKKGAGG 406
+GK L +LLS++ S ++L T+ D N L+NK ++R +++ +I ++
Sbjct: 20 LGKRALDYLLSNSVSNANLLMTLGSDEN-LQNKLSDLVERPNASNFSWNYAIFWQ----- 73
Query: 407 IRNSNTVEFVVQWTFDTGKCVDASPALYKSESVLYVTVG 445
I S + V+ W G C + KSE V +++G
Sbjct: 74 ISRSKAGDLVLCW--GDGYCREPKEG-EKSEIVRILSMG 109
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 29.9 bits (64), Expect = 6.5
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 447 HSGKIVVMNANTGFIQGLIKLKSRIEAPILCVHDECVTSPCGVVGTYDGTVICFLLENCS 506
H+ I V N N I L + I AP +H V T+D I F L CS
Sbjct: 2821 HARNIPVFNKNQRSIVAL-PIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCS 2879
Query: 507 VIWQINVGSMIKSKATYCKGVLYIASYDG 535
W + G + ++ +G++ +A +G
Sbjct: 2880 APWMLRNGILTSGESLIHRGLMALADVEG 2908
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.9 bits (64), Expect = 6.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 491 GTYDGTVICFLLENCSVIWQINVGSMIKSKATYCKGVLYIASYDGNIR 538
G+ D T+ + L++ S++ ++ + S GVLY S+DG +R
Sbjct: 603 GSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVR 650
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.5 bits (63), Expect = 8.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 264 RVDTLPTNAHGKTSKEILVNIYKKSNILQNVENIKSYLFKELK------ALVNKDLNY-E 316
R++ +P + IL+N+ + + + L+KE K L++ D Y +
Sbjct: 733 RINYVPRDIEDGYYLRILLNVQPGPRCFEELRTVNDVLYKEWKDACEALGLLDNDQEYID 792
Query: 317 DLQSKSFFSLGG 328
DL+ SF+S GG
Sbjct: 793 DLKRTSFWSSGG 804
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.5 bits (63), Expect = 8.6
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 526 GVLYIASYDGNIRCIDILTSTIKETVHVSDQAISADLVLAKNEFILFGTLSG 577
G+LY +S+D I+ I S E++H D AI++ ++ ++ + G+ G
Sbjct: 248 GLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINS-VMSGFDDLVFTGSADG 298
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 29.5 bits (63), Expect = 8.6
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 302 FKELKALVNKDLNYEDLQSKSFFSLGGTSFLAVTICNKLSLTFP 345
F LKA+ DL++ DLQ SLGG SFL+ + +LT P
Sbjct: 683 FGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGP 726
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,690,255
Number of Sequences: 28952
Number of extensions: 829726
Number of successful extensions: 2019
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1996
Number of HSP's gapped (non-prelim): 29
length of query: 758
length of database: 12,070,560
effective HSP length: 87
effective length of query: 671
effective length of database: 9,551,736
effective search space: 6409214856
effective search space used: 6409214856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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