GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001040-TA|BGIBMGA001040-PA|undefined
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0077 - 28180918-28183269,28183553-28184608                       27   7.1  
09_04_0409 + 17359459-17360622                                         27   7.1  
05_03_0613 - 16192024-16192470,16192579-16192734                       27   7.1  
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827...    27   9.4  

>11_08_0077 - 28180918-28183269,28183553-28184608
          Length = 1135

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/43 (39%), Positives = 18/43 (41%)

Query: 90  MLDAIDPAVRSSFAAMQLERGERCDFPLYPTGCLRPALIQLRN 132
           M DA D        AMQ +RG        P GCL   L  LRN
Sbjct: 72  MYDATDILDLCHLKAMQRQRGGGSSSSSNPVGCLDSLLFCLRN 114


>09_04_0409 + 17359459-17360622
          Length = 387

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 132 NYVNSLSALASAMIVCMDIR 151
           NYVNSL+A A  ++V +D R
Sbjct: 171 NYVNSLAAAAGVLVVSVDYR 190


>05_03_0613 - 16192024-16192470,16192579-16192734
          Length = 200

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 103 AAMQLERGERCDFPLYPTGCLRPALIQLRNYVNSLS---ALASAMIVCMDIRRRDD 155
           +++  E   R   P+Y  GC+  A+  L+N V+ L    A+A A I+C+ ++ RDD
Sbjct: 64  SSLVYEANARMRDPVY--GCVG-AISFLQNQVSQLQMQLAVAQAEILCIQMQHRDD 116


>03_06_0777 +
           36181095-36181311,36181444-36181530,36181785-36182725,
           36182956-36183006,36183240-36183328,36184975-36185078,
           36185179-36185278,36185396-36185471,36185556-36185670,
           36185755-36186286,36187032-36187527
          Length = 935

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 79  AALNASMAQAMMLDAIDPAVRSSFAAMQL 107
           AAL     Q M+  A+DPA  S+ AA+Q+
Sbjct: 385 AALRVRTGQIMVPAAVDPAQASALAALQV 413


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,605,491
Number of Sequences: 37544
Number of extensions: 94941
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 14,793,348
effective HSP length: 78
effective length of query: 110
effective length of database: 11,864,916
effective search space: 1305140760
effective search space used: 1305140760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)