GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001040-TA|BGIBMGA001040-PA|undefined
         (188 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016)                   28   5.5  
SB_55843| Best HMM Match : Aa_trans (HMM E-Value=0.00091)              27   9.6  

>SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016)
          Length = 556

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 1   MSYYFWTSDLGVELSSSVLFIAGALLCLPTCWLS 34
           ++ + +TS +G+ ++   +F+AGA  C P  +LS
Sbjct: 134 LAAFHFTSHMGIPINCVFMFLAGACNCGPDPYLS 167


>SB_55843| Best HMM Match : Aa_trans (HMM E-Value=0.00091)
          Length = 281

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 14  LSSSVLFIAGALLCLPTCWLSTL 36
           ++  +L +A ALLCLP  +L TL
Sbjct: 111 VTQELLTVAAALLCLPLVYLKTL 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,998,030
Number of Sequences: 59808
Number of extensions: 97444
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 2
length of query: 188
length of database: 16,821,457
effective HSP length: 78
effective length of query: 110
effective length of database: 12,156,433
effective search space: 1337207630
effective search space used: 1337207630
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)