GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001039-TA|BGIBMGA001039-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (249 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.72 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.7  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 161 PYYGVKHEYTKSWDDTQTYLQCCGVKSPND 190
           P+Y + H  T      Q Y + C   +P+D
Sbjct: 25  PHYNIHHGATPPQSPNQQYTKDCSSPTPSD 54


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 21  KETKTAMLWRRVMGMGGAM 39
           +  KT M W +  G GG M
Sbjct: 837 RSLKTKMAWLKEEGFGGIM 855


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,011
Number of Sequences: 317
Number of extensions: 1957
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 249
length of database: 114,650
effective HSP length: 55
effective length of query: 194
effective length of database: 97,215
effective search space: 18859710
effective search space used: 18859710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)