GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001039-TA|BGIBMGA001039-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (249 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    37   0.016
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    36   0.036
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    31   0.59 
AL132948-6|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   2.4  
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   4.1  
U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin fam...    28   7.2  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    27   9.5  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 104 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPYY 163
           L  LGCCGA +E  C+ +++                  +   +     +  +L   +  Y
Sbjct: 66  LGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRY 125

Query: 164 GVKHEYTKSWDDTQTYLQCCGVKSPNDW--HGNLPESCCREAYPGKRIDCKSNQNPTTIY 221
                   +WD T    +CCGV + +DW     +P+SCC E   G    C     P  ++
Sbjct: 126 HESRGVESAWDKTHQLFECCGVTNSSDWLTFTTIPDSCCIEEIEG----CARENAP--LF 179

Query: 222 VDGCLDKVIEFLREDAVYV 240
             GC+  V +++ ++   V
Sbjct: 180 EPGCIHSVEQWVLKNGAMV 198


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 158 ASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWH------GNL--PESCCR----EAYP 205
           A V   G + + + +WD  Q  LQCCGV +  DWH       NL  P+SCC     +A  
Sbjct: 122 AVVTKIGREIKLSLTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAEN 181

Query: 206 GKRIDCKSNQNPTTIYVDGCLDKVIEFLREDAVYVVLLPSL 246
           G     K     + +Y  GC  K  ++L    + V  + S+
Sbjct: 182 GTENCGKLPDEQSLLYQKGCFPKFSDWLYHHIILVNWVTSI 222


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 43/233 (18%)

Query: 43  GRCMKFSLICINVITXXXXXXXXXXXXWVWTSRSFSSTLMSNNMFIASXXXXXXXXXXXX 102
           GR +KFS I   +I+            W+   RS  + L+S ++++              
Sbjct: 13  GRLIKFSYIVTALISILFSISCICYGIWLLARRSQYAELVSPSLYV-DVGRILVIISILS 71

Query: 103 XLSLLGCCGAA-KEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFRE----------KVLTT 151
            L+ L C  A  KE++C + +                     FR+          K+LT+
Sbjct: 72  ILNYLICFYAIFKEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTS 131

Query: 152 LDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPND--------WHGN-------LP 196
           L RELY +    G+    T+SWD  Q+  +CCGV   ++        W+ +       +P
Sbjct: 132 L-RELYGTHDMKGI----TESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIP 186

Query: 197 ESCCREAYPGKRIDCKSN----QNPTTIYVDGCLDKVIEFLREDAVYVVLLPS 245
           ESCC    P +   C+SN      P   Y   C     E L+ D ++V+ + S
Sbjct: 187 ESCC---IPSEIERCRSNPFDQDAPPPYYTSTC----YEPLQNDLLHVMNVAS 232


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 108 GCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPY-YGVK 166
           GC GA K  +C L  +                  F  +E +   ++  +Y ++   Y  +
Sbjct: 74  GCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSE 133

Query: 167 HEYTKSWDDTQTYLQCCGVKSPNDW 191
             +  ++D  Q   +CCGVK+  DW
Sbjct: 134 TAFKDAFDTVQEKFECCGVKTYTDW 158


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 5/168 (2%)

Query: 30  RRVMGMGGAMD-SCGRCMKFSLICINVITXXXXXXXXXXXXWVWTSRSFSSTLMS--NNM 86
           R   G GG  + SC  C+K+S+   NVI             W    ++    ++S  + +
Sbjct: 23  RYAPGAGGESEISC--CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKL 80

Query: 87  FIASXXXXXXXXXXXXXLSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFRE 146
           ++               +   GC G+ +E    L  Y                  +  R+
Sbjct: 81  YLDPTWPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRD 140

Query: 147 KVLTTLDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGN 194
           ++   +   L   V  Y    +     D  Q    CCG+   +DW  N
Sbjct: 141 QLDNYIRNLLNDVVVGYRDDPDLQLLIDSMQETWMCCGINGADDWDRN 188


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 104 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPYY 163
           +  LG CGA    + +LL +                    +++KV +  +         Y
Sbjct: 40  VGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSVKENVREIVKSKY 99

Query: 164 GVKHE------YTKSWDDTQTYLQCCGVKSPNDW 191
           GV          T+  D  Q Y +CCG   P D+
Sbjct: 100 GVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDY 133


>AL132948-6|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 104 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDREL-YASVPY 162
           +++LGCCG     +  L+ Y                     ++ +   L   L Y    Y
Sbjct: 127 VAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQHY 186

Query: 163 YGVKHEYTKSWDDTQTYLQCCGVKSPND---WHGNLPESC 199
           Y       +S D  QT  +CCG    +D   +  ++P SC
Sbjct: 187 YQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 104 LSLLGCCGAAKEVKCMLLTY 123
           ++ LGCCGAAKE + +L  Y
Sbjct: 96  VAFLGCCGAAKEWRPLLCCY 115


>U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin family
           protein 10 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 173 WDDTQTYLQCCGVKSPNDW 191
           W +TQ    CCGV +  DW
Sbjct: 154 WANTQDLFGCCGVYNSTDW 172


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/29 (27%), Positives = 22/29 (75%)

Query: 212 KSNQNPTTIYVDGCLDKVIEFLREDAVYV 240
           ++N++  + Y+  C++++ + LR+D++YV
Sbjct: 26  RNNKDNESRYITQCMEEIKQELRQDSIYV 54


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,437,191
Number of Sequences: 27539
Number of extensions: 200534
Number of successful extensions: 318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 14
length of query: 249
length of database: 12,573,161
effective HSP length: 80
effective length of query: 169
effective length of database: 10,370,041
effective search space: 1752536929
effective search space used: 1752536929
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)