GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001039-TA|BGIBMGA001039-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (249 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    46   3e-07
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 10/127 (7%)

Query: 104 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVF--REKVLTTLDRELYASVP 161
           +S  GCCGA +E  CM +T+                  F+    +     +  +      
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFN 124

Query: 162 YYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGN-LPESCCREAYPGKRIDCKSNQNPTTI 220
            Y +  E     D  Q  LQCCGV S +D++   +P SCC    P       SN      
Sbjct: 125 GYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNS--PENNTCSISNS----- 177

Query: 221 YVDGCLD 227
           Y +GC++
Sbjct: 178 YTNGCVE 184


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 198 SCCREAYPGKRIDCKSNQNPTTIYVDGCLDKVIEFLREDAVYVVLLPSLS 247
           SCC E YP    + +  + P   YV   +   I  +   A+ V  +PS S
Sbjct: 194 SCCPEPYPDITYEIRLRRRP-MFYVFNLILPCI-LINSVALLVFYVPSES 241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,915
Number of Sequences: 429
Number of extensions: 2438
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 249
length of database: 140,377
effective HSP length: 56
effective length of query: 193
effective length of database: 116,353
effective search space: 22456129
effective search space used: 22456129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)