GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001039-TA|BGIBMGA001039-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (249 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52950.1 68414.m05988 replication protein-related low similar...    29   2.2  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    27   9.0  

>At1g52950.1 68414.m05988 replication protein-related low similarity
           to replication protein A1 GI:2258469 from (Oryza sativa)
          Length = 566

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 166 KHEYTKSWDDTQTYLQCCGVKSPNDWH 192
           K + TK  D+T T +    V +PNDWH
Sbjct: 497 KKQCTKDSDETVTDVTVIDVDNPNDWH 523


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 29  WRRVMGMGGAMDSCGRCMKFSLICINVIT 57
           W+  + +G AM  C  C++   ICIN  T
Sbjct: 322 WKLYVKIGAAMRRCAYCLENLSICINYET 350


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,305,832
Number of Sequences: 28952
Number of extensions: 193887
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 2
length of query: 249
length of database: 12,070,560
effective HSP length: 79
effective length of query: 170
effective length of database: 9,783,352
effective search space: 1663169840
effective search space used: 1663169840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)