Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
         (1198 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   3.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   6.4  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 559 TYHD--EVRKNFQATLKWLHEYACSRTYGLGTKLPWDQQWVIESLSDSTIYN 608
           T+H+  ++R + +A +K ++E    R YG      W Q  V+   S+ + YN
Sbjct: 41  TFHELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGVMNG-SELSTYN 91


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
            channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 959  IILTTLKELNGPDGLPDNKTISSRLSQLDELRKYSKRVMPFVQAT 1003
            + LT +  +   D   D K+    L  L    +Y KR++P VQ T
Sbjct: 41   LALTLVTLVRAEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQGT 85


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
            channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 959  IILTTLKELNGPDGLPDNKTISSRLSQLDELRKYSKRVMPFVQAT 1003
            + LT +  +   D   D K+    L  L    +Y KR++P VQ T
Sbjct: 41   LALTLVTLVRAEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQGT 85


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
            channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 959  IILTTLKELNGPDGLPDNKTISSRLSQLDELRKYSKRVMPFVQAT 1003
            + LT +  +   D   D K+    L  L    +Y KR++P VQ T
Sbjct: 41   LALTLVTLVRAEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQGT 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,600
Number of Sequences: 429
Number of extensions: 14041
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 4
length of query: 1198
length of database: 140,377
effective HSP length: 66
effective length of query: 1132
effective length of database: 112,063
effective search space: 126855316
effective search space used: 126855316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)