Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
(1198 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)... 1009 0.0
At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative / leuc... 55 3e-07
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)... 47 9e-05
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 46 2e-04
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot... 42 0.002
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li... 40 0.010
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i... 34 0.50
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-... 33 0.87
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 33 1.2
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to... 32 2.7
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to... 32 2.7
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 32 2.7
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam... 32 2.7
At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase fam... 32 2.7
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 31 3.5
At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-relat... 31 4.7
At4g19990.1 68417.m02927 far-red impaired responsive family prot... 31 6.1
>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
family protein similar to cytosolic leucyl-tRNA
synthetase [Candida albicans] GI:9858190; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1084
Score = 1009 bits (2498), Expect = 0.0
Identities = 505/1061 (47%), Positives = 688/1061 (64%), Gaps = 29/1061 (2%)
Query: 14 ALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPDD-GKSHEKFLCTFPYPYMNGRLHL 72
A + K + + L EIE V++ WE + +F E+ ++ K EKF TFP+PYMNG LH+
Sbjct: 2 ASESKSYARRDRLLEIEATVRKWWEDEDVFRAESCENLPKPGEKFFSTFPFPYMNGYLHI 61
Query: 73 GHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDE 132
GH FSLSK +FA Y+RL+G VL PFGFHCTGMPIKA ADKL+RE+ +G PPVF ++
Sbjct: 62 GHAFSLSKVDFASAYHRLRGANVLLPFGFHCTGMPIKASADKLRREIEQFGNPPVFTAED 121
Query: 133 -----ELIVKDEDIIPX---XXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANE 184
E+ + D I YQW+IM+S G+ + EI F
Sbjct: 122 TTKVPEVQEESSDTIALPIPGQFKGKKSKVAAKAGGQVYQWEIMRSFGLTDSEIANFREP 181
Query: 185 SYWLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRY 244
S WL YFPP AV DL+ G+ DWRR F+TTD NPF+D+F++WQ LK KI+ +RY
Sbjct: 182 SEWLYYFPPLAVEDLRAYGLGCDWRRSFVTTDVNPFFDAFVRWQMRKLKSMGKIVKDRRY 241
Query: 245 TIFSPLDKQPCMDHDRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPE 304
TIFSPLD QPC DHDR+TGEG PQEYTLIKM V++P P L L+GK++ L AATLRPE
Sbjct: 242 TIFSPLDGQPCADHDRATGEGVQPQEYTLIKMEVVKPFPLKLGPLEGKRVFLAAATLRPE 301
Query: 305 TMYGQTNCWVHPDIKYIAFETVKDGVFICTKRAARNMSYQDFTEKDGEFKILLEIVGQDL 364
TMYGQTN WV PD KY A+E + VFI T+RAA N++YQ+F++ E L+E+ G DL
Sbjct: 302 TMYGQTNAWVLPDGKYGAYEISETEVFILTERAALNLAYQNFSKNPQEPSCLVELTGYDL 361
Query: 365 LGLSVQSPFTCYPKIYALPMLTIKEDKGTGIVTSVPSDSPDDYAALVDLQKKPAFREKYG 424
+GL ++SP + IYALPMLTI +KGTGIVTSVPSD+PDDY AL DL KKPA ++KYG
Sbjct: 362 IGLPLRSPLSVNEIIYALPMLTILTNKGTGIVTSVPSDAPDDYMALQDLIKKPALQDKYG 421
Query: 425 IADDMILPFKPVPILETPDFGNLSAVYLYDELKIQSQNDREKLTQAKEMVYLKGFYDGVL 484
+ + LP + +PI+ P+FG+ +A + +LKI+SQND+EKL +AK + YLKGF +G +
Sbjct: 422 VKTEW-LPTEIIPIINIPEFGDKAAEKVCLDLKIKSQNDKEKLAEAKRLTYLKGFTEGTM 480
Query: 485 LVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALCNQWYLDYGNE 544
L+GE G K+Q++K ++TKLI+ G+A+IY EPEK ++SRSGDECVVAL +QWY+ YG
Sbjct: 481 LIGEFFGRKVQEIKPIIKTKLIETGEAIIYSEPEKPVMSRSGDECVVALTDQWYITYGES 540
Query: 545 EWKGQAEKALEAMNTYHDEVRKNFQATLKWLHEYACSRTYGLGTKLPWDQQWVIESLSDS 604
EW+ AE+ L MN Y DE R F+ TL WL+++ACSR++GLGT++PWD+Q+++ESLSDS
Sbjct: 541 EWRKIAEECLSKMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQFLVESLSDS 600
Query: 605 TIYNAYYTISH-FLQGDTFRGNKENTLKIKPEQMTSEVWDYIFFKEAPLPKNTVIDRKSL 663
++Y AYYT++H F GD ++G+K I+P+QM EVW+Y+F + P PK++ I L
Sbjct: 601 SLYMAYYTVAHIFHDGDMYKGSKS---LIRPQQMNDEVWEYLFC-DGPYPKSSDIPSAVL 656
Query: 664 DLMRKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSA 723
M++ F +WYP+DLRVSGKDLIQNHLTF+IYNH A+ N WP+GIR NGH+MLNS
Sbjct: 657 SEMKQEFDYWYPLDLRVSGKDLIQNHLTFFIYNHTALMAN--RNWPRGIRCNGHIMLNSE 714
Query: 724 KMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVK 783
KMSKS GNF TL +SIE+FSA G R LADAGD V+DANF TA+AAILRL + W++
Sbjct: 715 KMSKSTGNFRTLRQSIEEFSATGTRFCLADAGDGVDDANFAFETANAAILRLTKELTWME 774
Query: 784 EVLASKSTLRSG-DYNFHDKVFVSEMNIKILQTDDNYNRMLFKEALKSGFFELQAARDKY 842
EVL +S+LR+G + DKVF ++MNI + T+ Y LF+EALK+GF++LQAARD+Y
Sbjct: 775 EVLDVESSLRTGPPSTYADKVFENDMNIALRLTERAYKDCLFREALKNGFYDLQAARDEY 834
Query: 843 RELCSEGGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLGNKTS-ILHSRWPVAGDVDE 901
R C GGMH +L+ K+++VQ +L+ PICPH A+YVW + NK +L + WP + + D
Sbjct: 835 RLSCGTGGMHHDLLLKFMDVQTRLIVPICPHFADYVWRKVLNKEGCVLTAGWPPSNEPDL 894
Query: 902 VAVKASNYLMDAAHSFRVYLKNHCA---LXXXXXXXXXXXXXXXXXAVIWVAKEFPKWQR 958
V A+ YL D+ R L+ + +++V ++F W+
Sbjct: 895 VLKSANKYLQDSIVLMRKLLQKQLSGSKKGAKKGAQVTAVPEGKLKGLVYVNEQFDGWRA 954
Query: 959 IILTTLKELNGPDGL---PDNKTI----SSRLSQLDELRKYSKRVMPFVQATRECVRRDG 1011
L L+ PD + + ++ L + L+ K MPF++ ++ G
Sbjct: 955 HCLRILQSRFDQQTCSFPPDTEMLAELSATLLQEGKNLKAIQKVCMPFLKFKKDEAISIG 1014
Query: 1012 GXXXXXXXXXXXXXXXRDNAAYLRATLDLDAIEVKYTDSAD 1052
+ N +R L L+ +E+ D
Sbjct: 1015 TQALNLRLPFGEIEVLQSNKDLIRRQLGLEEVEIYSASDPD 1055
>At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative /
leucine--tRNA ligase, putative similar to SP|P36430
Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA
ligase) (LeuRS) {Bacillus subtilis}; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 973
Score = 54.8 bits (126), Expect = 3e-07
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 22 KVEYLQEIEKKVQERWESQKIFEVEAPDD-GKSHEKFLCTFPYPYMNGR-LHLGHTFSLS 79
+V EIE K Q WE +IF PDD S KF +PY +G LH+GH +
Sbjct: 83 RVYPFHEIEPKWQRYWEDNRIFRT--PDDVDTSKPKFYVLDMFPYPSGAGLHVGHPLGYT 140
Query: 80 KCEFACRYYRLKGRMVLFPFGFHCTGMPIKACA 112
+ R R++G VL P G+ G+P + A
Sbjct: 141 ATDILARLRRMQGYNVLHPMGWDAFGLPAEQYA 173
Score = 36.7 bits (81), Expect = 0.094
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 14/176 (7%)
Query: 724 KMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVK 783
KMSKS GN + + + ++ AD +RL G + + S + L V
Sbjct: 730 KMSKSRGNVVNPDDVVLEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLARTWRLVI 789
Query: 784 EVLASKSTLRSGDYNFHDKVFVSEMNIK---ILQTDDNYNRMLFKEALKSGFFELQAARD 840
+ S + + G D+ + ++ I + + F + SG E A
Sbjct: 790 GLPQSDGSFKDGTLVTDDEPTLEQLRTLHKCIAKVTEEIESTRFNTGI-SGMMEFVNAAY 848
Query: 841 KYRELCSEGGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLGNKTSILHSRWPVA 896
K+ G+ IE L+SP PH+AE +W LG+ S+ + +P A
Sbjct: 849 KWNN--QPRGI--------IEPFVLLLSPYAPHMAEELWSRLGHPNSLAYESFPKA 894
>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P11931 Valyl-tRNA
synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
{Bacillus stearothermophilus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 970
Score = 46.8 bits (106), Expect = 9e-05
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 30 EKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYR 89
E+K+ + WESQ F+ P+ + F+ P P + G LH+GH ++ + RY R
Sbjct: 78 EEKIYKWWESQGYFK---PNFDQGGSPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNR 134
Query: 90 LKGRMVLFPFGFHCTGMPIKACADKL 115
+ GR L+ G G+ + +K+
Sbjct: 135 MNGRPTLWLPGTDHAGIATQLVVEKM 160
Score = 40.3 bits (90), Expect = 0.008
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 37/263 (14%)
Query: 664 DLMRKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWP-KGIRANGHLMLNS 722
D+ K F +YP ++ +G D+ L F++ M P + +G + +
Sbjct: 536 DVAAKDFNNFYPTNMLETGHDI----LFFWVARMVMMGIEFTGTVPFSHVYLHGLIRDSQ 591
Query: 723 A-KMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVES--TADAAIL-RLYTF 778
KMSKS GN + ++I+ F D +R T+A G + +D N TA+ A +L+
Sbjct: 592 GRKMSKSLGNVIDPLDTIKDFGTDALRFTIA-LGTAGQDLNLSTERLTANKAFTNKLWNA 650
Query: 779 IEWVKEVLASKSTLRSGDYNFHDKV---------------FVSEMNIKILQTDDNYNRML 823
++V L S S + + K+ VS+++I I +Y ++
Sbjct: 651 GKFVLHSLPSLSDTSAWENLLDLKLDKEETLLSLPLPECWAVSKLHILIDSVTASYEKLF 710
Query: 824 FKEALKSGF-FELQAARDKYRE-----LCSEGGMHVELVTKYI-----EVQAKLMSPICP 872
F + + + F D Y E L GG V L ++ + E KL+ P P
Sbjct: 711 FGDVGRETYDFFWSDFADWYIEASKSRLYGSGGNSVSLASQAVLLYVFENILKLLHPFMP 770
Query: 873 HVAEYVWELLG-NKTSILHSRWP 894
V E +W+ L K +++ S WP
Sbjct: 771 FVTEDLWQALPYRKEALIVSPWP 793
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 30 EKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYR 89
E ++Q+ WE ++F+ D + F+ PY NG LH+GH + + RY
Sbjct: 123 EPELQKLWEENQVFK--RVSDNNNGGSFILHDGPPYANGDLHMGHALNKILKDIINRYKL 180
Query: 90 LKGRMVLFPFGFHCTGMPIK 109
L+ V + G+ C G+PI+
Sbjct: 181 LQNYKVQYVPGWDCHGLPIE 200
>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
similar to cysteine-tRNA ligase [Escherichia coli]
GI:41203; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 563
Score = 42.3 bits (95), Expect = 0.002
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 674 YPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNFL 733
Y D+ G DL+ H I CA + + I NG + ++S KMSKS GNF
Sbjct: 281 YSFDIHGGGMDLVFPHHENEIAQSCAACDSSNISY--WIH-NGFVTVDSEKMSKSLGNFF 337
Query: 734 TLSESIEKFSADGMRLTLADA--GDSVEDANFVESTADAAILRLYTFIEWVKEVLASK-S 790
T+ + I+ + +RL L + ++F+ +A I +Y + + L K S
Sbjct: 338 TIRQVIDLYHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDS 397
Query: 791 TLRSG 795
T +G
Sbjct: 398 TFENG 402
>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
{Arabidopsis thaliana}
Length = 1108
Score = 39.9 bits (89), Expect = 0.010
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 166 QIMKSIGVPEEEI--KEFANESY-WLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYD 222
+IM+ G+ ++ +EF E + W + +T L+R+G +DW R+ T D
Sbjct: 228 KIMRDRGMTRHDVGREEFVKEVWKWKNQYGGTILTQLRRLGASLDWSRECFTMDEQ--RS 285
Query: 223 SFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDHDRSTGEGAGPQEYTLIKMVVLE-P 281
+ F L I R + + + D + E +E TL+K+ E P
Sbjct: 286 KAVTEAFVRLYKEGLIYRDIRLVNWDCILRTAISDVE---VEYIDIKEKTLLKVPGYEKP 342
Query: 282 LPNCLIS-----LKGKKISLVAATLRPETMYGQTNCWVHPD 317
+ L++ L+G ++ AT R ETM G T +HPD
Sbjct: 343 VEFGLLTSFAYPLEGGLGEVIVATTRVETMLGDTAIAIHPD 383
Score = 38.7 bits (86), Expect = 0.023
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 29 IEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYY 88
+EK WE +F+ +A S F+ P P + G LH+GH + + + R+
Sbjct: 145 VEKSWYAWWEKSDLFKADAKS---SKPPFVIVLPPPNVTGALHIGHALTSAIEDTIIRWK 201
Query: 89 RLKGRMVLFPFGFHCTGMPIKACADK 114
R+ G L+ G G+ + +K
Sbjct: 202 RMSGYNALWVPGVDHAGIATQVVVEK 227
>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
isoleucine--tRNA ligase, putative similar to SP|P41252
Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
(Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
contains Pfam profile PF00133: tRNA synthetases class I
(I, L, M and V)
Length = 1190
Score = 34.3 bits (75), Expect = 0.50
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 64 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADK 114
P+ G H GH + + + RY + G V FG+ C G+P++ D+
Sbjct: 49 PFATGLPHYGHILAGTIKDIVTRYQTMTGHHVTRRFGWDCHGLPVENEIDR 99
>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
methionine--tRNA ligase / MetRS (cpMetRS) identical to
methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
GI:2266985
Length = 616
Score = 33.5 bits (73), Expect = 0.87
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 55 EKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFG 100
E F+ T P Y+N H+G ++ + R+ RL G+ V+F G
Sbjct: 69 ETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITG 114
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 33.1 bits (72), Expect = 1.2
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 715 NGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADA---GDSVEDANFVESTADAA 771
NGH+ +N+ KM+KS+ NF T+ E + +R L A A+ +ES+++ A
Sbjct: 262 NGHVTINNEKMAKSKHNFKTIREITASYHPLALRHFLMSAQYRSPLSFTASQLESSSE-A 320
Query: 772 ILRLYTFIEWVKEVLASKSTLRSGDYNFHDKVFVSEMNIKILQTD 816
+ +Y ++ + E L+ S D ++ + IK L+T+
Sbjct: 321 LYYVYQTLQDLDEGLSPYQDALSEDGGKSEQTAEGKDIIKKLKTE 365
>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 31.9 bits (69), Expect = 2.7
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 284 NCLISLKGKKISLVAATLRPETMYGQTNCWVHPDIKYIAFETVKDG---VFICTKRAARN 340
N I L+GK S+VAA L+P+ + + P K I + +G + C R
Sbjct: 283 NGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERV 342
Query: 341 MSYQDFTEKDGEFKILLEIVGQDLLGLSVQSPFTCYPKIYALPMLTIKEDKGTGIVTS-- 398
+ + G I E+ D LGL+ + P + KI A+ L G+G +T
Sbjct: 343 KRLEHTIKLSGASNI--EVCHGDFLGLNPKDP--SFAKIRAI--LLDPSCSGSGTITDRL 396
Query: 399 ---VPSDSPDD 406
+PS S D+
Sbjct: 397 DHLLPSHSEDN 407
>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 31.9 bits (69), Expect = 2.7
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 284 NCLISLKGKKISLVAATLRPETMYGQTNCWVHPDIKYIAFETVKDG---VFICTKRAARN 340
N I L+GK S+VAA L+P+ + + P K I + +G + C R
Sbjct: 283 NGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERV 342
Query: 341 MSYQDFTEKDGEFKILLEIVGQDLLGLSVQSPFTCYPKIYALPMLTIKEDKGTGIVTS-- 398
+ + G I E+ D LGL+ + P + KI A+ L G+G +T
Sbjct: 343 KRLEHTIKLSGASNI--EVCHGDFLGLNPKDP--SFAKIRAI--LLDPSCSGSGTITDRL 396
Query: 399 ---VPSDSPDD 406
+PS S D+
Sbjct: 397 DHLLPSHSEDN 407
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 31.9 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 203 GIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDK 252
G+ ++W ++ T+ +P SF+ W+ RNK+ G + + +P+ K
Sbjct: 70 GVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKV--GLKGPMATPIGK 117
>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 2 AMPBP2 (AMPBP2) GI:20799712
Length = 603
Score = 31.9 bits (69), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 576 HEYACSRTYGLGTKLPWDQQWVIESLSDSTIYNAYYTISHF-LQG 619
H Y + TYG GT W +W SL + T A + H L+G
Sbjct: 384 HLYGLTETYGPGTHCVWKPEWDSLSLEERTKLKARQGVQHLGLEG 428
>At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 546
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 573 KWLHEYACSRTYGLGTKLPWDQQWVIESLSDSTIYNAYYTISHF 616
K + Y CS YGLGT W +W +S A ++HF
Sbjct: 316 KVMMAYGCSEVYGLGTACLWMPEWETLPEEESLRLKARDGLNHF 359
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 717 HLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLY 776
HL +NS K E N L E IEK +RL L D + D F +S+ + R
Sbjct: 329 HLKVNSVNKVKVE-NLKHLCELIEKCCTKDLRLELGDGRVIILDYQFAKSSTSLILERHR 387
Query: 777 TFIEWVKEVLASKST 791
K+++ +ST
Sbjct: 388 VPWAMSKDLMTDQST 402
>At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-related
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 168
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 382 LPMLTIKEDKGTGIVTSVPSDSPDDYAALVDLQKKPAFREKYGIADDMILPFKPVPILET 441
+P+L E+K + + ++ V+ +KKPA EK + ++ VP+ ET
Sbjct: 81 VPVLAAAEEKKPAVEEEKKTAPVEEKKPAVEEEKKPAVEEKKPVEEEKKEVVAAVPVAET 140
Query: 442 P 442
P
Sbjct: 141 P 141
>At4g19990.1 68417.m02927 far-red impaired responsive family protein
/ FAR1 family protein similar to far-red impaired
response protein [Arabidopsis thaliana] GI:5764395;
contains Pfam profile PF03101: FAR1 family
Length = 672
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 15 LDRKGTFKVEYLQEIEKKVQERWESQKIFEVE 46
+ RK TFK +L++ +K +QER+E ++ E+E
Sbjct: 392 IQRKTTFKA-FLEQYKKMIQERYEEEEKSEIE 422
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,921,252
Number of Sequences: 28952
Number of extensions: 1188887
Number of successful extensions: 2548
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2508
Number of HSP's gapped (non-prelim): 35
length of query: 1198
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1109
effective length of database: 9,493,832
effective search space: 10528659688
effective search space used: 10528659688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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