Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
(1198 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 953 0.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 52 6e-07
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 51 8e-07
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 48 1e-05
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 46 2e-05
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 43 3e-04
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 42 7e-04
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 36 0.026
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 31 0.73
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 30 2.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 2.9
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 29 2.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 9.0
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 28 9.0
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 953 bits (2358), Expect = 0.0
Identities = 483/1033 (46%), Positives = 662/1033 (64%), Gaps = 41/1033 (3%)
Query: 3 AVQMLSVRSRQALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPDDG-------KSHE 55
+V+ L ++ + L + T K + L E+EKK Q++W+ +K FEV+AP + K +
Sbjct: 7 SVEQLETKTAK-LKLENTTKRDTLIELEKKYQQKWQEEKAFEVDAPLEDVPIDELRKKYP 65
Query: 56 KFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKL 115
KF PYPYMNG LHLGH F+LSK EF + RL G+ VLFP GFHCTGMPI A AD+L
Sbjct: 66 KFFGNMPYPYMNGALHLGHAFTLSKVEFTTAFERLNGKRVLFPMGFHCTGMPICASADRL 125
Query: 116 KREMAVYGCPPVFPEDEELIVKDEDIIPXXXXXXXXXX-----XXXXXXXXXYQWQIMKS 170
RE+ ++G PE++E V+ E P YQ+QIM+S
Sbjct: 126 SREIEMFGPSFDVPEEKEEEVEVEVKTPNAREDVTKHSGKKSKAAAKTAAVKYQFQIMES 185
Query: 171 IGVPEEEIKEFANESYWLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFN 230
+GVP EI +FA+ YWL YFPP D G+ +DWRR FITTD NP+YDSF++WQ N
Sbjct: 186 LGVPRTEIHKFADAKYWLSYFPPLCQRDCTEFGLGIDWRRSFITTDVNPYYDSFVRWQVN 245
Query: 231 HLKDRNKIMYGKRYTIFSPLDKQPCMDHDRSTGEGAGPQEYTLIKMVVLEPLPNCL---- 286
HL D KI +G+RYT++S D QPCMDHDR +GEG GPQEYT IKM VLE P
Sbjct: 246 HLHDSGKIKFGERYTVYSIKDGQPCMDHDRKSGEGVGPQEYTGIKMEVLE-FPEAARKAL 304
Query: 287 --ISLKGKKISLVAATLRPETMYGQTNCWVHPDIKYIAFET-VKDGVFICTKRAARNMSY 343
I L KK+ ++AATLRPETMYGQTNC+V P+I Y +E+ V + +FICT+RAA NM+Y
Sbjct: 305 QSIDLSNKKVCMIAATLRPETMYGQTNCYVGPNITYGIYESNVPNELFICTRRAANNMAY 364
Query: 344 QDFTEKDGEFKILLEIVGQDLLGLSVQSPFTCYPKIYALPMLTIKEDKGTGIVTSVPSDS 403
Q +++ G L I GQDL+G V +P + + ++Y LPM T+ KGTG+VTSVPSDS
Sbjct: 365 QKLSKERGVVSELGTIKGQDLIGALVNAPLSVHKQVYVLPMETVLATKGTGVVTSVPSDS 424
Query: 404 PDDYAALVDLQKKPAFREKYGIADDMILPFKPVPILETPDFGNLSAVYLYDELKIQSQND 463
PDD+A L +L+KK F Y + + + ++ VPI+ TP +G++ A +L +LKIQS D
Sbjct: 425 PDDFATLTELRKKAEF---YHLNPEW-MKYEAVPIIRTPSYGDMCAEFLCKKLKIQSPKD 480
Query: 464 REKLTQAKEMVYLKGFYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIIS 523
++L QAKE+ Y + FY G +++G++ G K++ K ++ +LI +G A +Y EPE +IS
Sbjct: 481 VKQLAQAKELAYKECFYQGTMIIGKYSGEKVETAKPKVRKELIDQGLAFVYNEPEGQVIS 540
Query: 524 RSGDECVVALCNQWYLDYGNEEWKGQAEKALEAMNTYHDEVRKNFQATLKWLHEYACSRT 583
RSGD+C+VALC+QW+LDYG WK EKAL+ +NT+ EVR F TL WL ++AC+R+
Sbjct: 541 RSGDDCIVALCDQWFLDYGEASWKAVTEKALDRLNTFSPEVRNGFLKTLDWLSQWACARS 600
Query: 584 YGLGTKLPWDQQWVIESLSDSTIYNAYYTISHFLQGDTFRGNKENTLKIKPEQMTSEVWD 643
YGLGT+LPWD Q+++ESL+DSTIY AYYTI H L D + G L IKPEQMT EVWD
Sbjct: 601 YGLGTRLPWDPQFLVESLTDSTIYMAYYTICHLLHSDVY-GKVPGALNIKPEQMTPEVWD 659
Query: 644 YIFFKEAPLPKNTVIDRKSLDLMRKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPN 703
++ F++AP PKNT I ++L + + FQ++YP D+R SGKDL+ NHLTF +Y H A++
Sbjct: 660 HV-FRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLVPNHLTFCLYTHTAIF-- 716
Query: 704 EEEKWPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANF 763
+E+ WPKGIRANGHL++N KMSKS GNF+TL E+ +KF AD RL LADAGD+V+DANF
Sbjct: 717 DEKYWPKGIRANGHLLMNGEKMSKSTGNFMTLHEATKKFGADATRLALADAGDTVDDANF 776
Query: 764 VESTADAAILRLYTFIEWVKEVLASKSTLRSGDYNFHDKVFVSEMNIKILQTDDNYNRML 823
E+ A++AILRLYT W KE++ + LR+G YNFHDKVF +E+N I + + ++ L
Sbjct: 777 EEALANSAILRLYTQEAWCKEMMENLDNLRTGPYNFHDKVFENEINQLIESSREAFSATL 836
Query: 824 FKEALKSGFFELQAARDKYRELCSEGGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLG 883
FK ALKS F++LQ ARD YRE+ ++ MH +LV ++IE Q L++ PH +E++W
Sbjct: 837 FKAALKSCFYDLQNARDWYREVTADRKMHRDLVCRWIETQVLLLATFAPHWSEHIWLTTL 896
Query: 884 NKTSILH--SRWPVAGDVDEVAVKASNYLMDAAHSFRVYLKNHCALXXXXXXXXXXXX-- 939
K +H R+P A+ SN L+ RV + A
Sbjct: 897 KKPQSIHVSGRFPQVSSPVNTAL--SNSLLYIRTLSRVIREAEAAQLKRQKKGKGMLFDP 954
Query: 940 XXXXXAVIWVAKEFPKWQRIILTTL-KELNGPDGLPDNKTISSRLSQLDELRKYSKRVMP 998
++VA++FP+WQ + L K N + D+K I +S +D +K KR MP
Sbjct: 955 SKPKRLTVFVAEKFPEWQAQYVALLQKYYNESENKFDDKAI---ISSVD--KKEMKRAMP 1009
Query: 999 FVQATRECVRRDG 1011
F+Q ++ V G
Sbjct: 1010 FIQQFKQSVINRG 1022
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 29 IEKKVQERWESQKIFEVEAPDDGKSHEK--FLCTFPYPYMNGRLHLGHTFSLSKCEFACR 86
+E + W FE E DGK ++ F+ T P P + G LH+GH +++ + R
Sbjct: 102 VESAWYDWWVKSGFFEPEFGPDGKPKKEGVFVITSPPPNVTGALHIGHALTIAIQDSLAR 161
Query: 87 YYRLKGRMVLFPFGFHCTGMPIKACADK 114
+ R+ G+ VLF GF G+ ++ +K
Sbjct: 162 WNRMLGKTVLFLGGFDHAGLSTQSVVEK 189
Score = 37.5 bits (83), Expect = 0.011
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 187 WLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTI 246
W E + R + R+G DW R+ T D N + F L + N I R
Sbjct: 214 WKEEYHNRIKNQMSRLGGSFDWTREAFTMDEN--LSRAVVETFVRLHEENIIYRANRLVN 271
Query: 247 FSPLDKQPCMDHDRSTGEGAGPQEYTLIKM------VVLEPLPNCLISLKGKKISLVAAT 300
+ + + + + G TL+K+ V + L + +++G +V AT
Sbjct: 272 WCTALQTTLSNLEVENVDVPGR---TLLKVPGYDEPVEVGVLTSIAYAVEGSDERIVIAT 328
Query: 301 LRPETMYGQTNCWVHP-DIKY 320
RPET+ G T VHP D +Y
Sbjct: 329 TRPETLLGDTAVAVHPQDPRY 349
Score = 32.3 bits (70), Expect = 0.42
Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 720 LNSAKMSKSE-GNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAA---ILRL 775
L+S ++ K++ G L+ + I + D +R TL D N + +L
Sbjct: 684 LDSREVEKAKKGQRLSYPKGIPQCGTDALRFTLCSLTTGGRDLNLDILRVEGYRKFCNKL 743
Query: 776 YTFIEWVKEVLAS-----KSTLRSGDYNFHDKVFVSEMNIKILQTDDNYNRMLFKEALKS 830
Y ++ L S K+ +G+ + +K +NI + N M F +A +
Sbjct: 744 YNATKFALGRLGSNFVPNKTADLTGNESLVEKWIFHRLNIAAAAMNKNMEEMNFLQATSA 803
Query: 831 GF-FELQAARDKYRE----LCSEGGMHVELVTKY-----IEVQAKLMSPICPHVAEYVWE 880
F L D Y E L S+G + K ++ +LM P P+V E +W+
Sbjct: 804 VHQFWLYELCDVYIENSKYLLSDGTEVQQESAKQTLYTVLDNALRLMHPFMPYVTEEMWQ 863
Query: 881 LL----GNKT-SILHSRWPV--AGDVDEVAVKASNYLMDAAHSFR 918
L G+KT +I+ + +PV +E+A K ++ HS R
Sbjct: 864 RLPRRPGDKTQTIVKAAFPVERVDYSNEIAAKYYESIITVVHSTR 908
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 33 VQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLKG 92
+ E W+S + K +K++ + +PY +G LH+GH + + RYYR+KG
Sbjct: 37 IAENWKSYWKSHYPFVKNDKGKKKYILSM-FPYPSGLLHIGHVRVYTISDILSRYYRMKG 95
Query: 93 RMVLFPFGFHCTGMPIKACA 112
V+ P G+ G+P + A
Sbjct: 96 YKVIHPMGWDAFGLPAENAA 115
Score = 36.3 bits (80), Expect = 0.026
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 16/194 (8%)
Query: 718 LMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYT 777
+ L+ KMSKS+ N + +I+K+ +D +R + + VE A R T
Sbjct: 622 VQLSYQKMSKSKHNGVDPIRTIQKYGSDIIRAYIIFSAP-VEGVLLWNENAIMGTKRWLT 680
Query: 778 FIEW--VKEVL--------ASKSTLRSGDYNFHDKVFVSEMNIKILQTDDNYNRMLFKEA 827
I W V ++L A + T + + + + S+ N I Q +Y +
Sbjct: 681 KI-WNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVFSLNL 739
Query: 828 LKSGFFELQAARDKYRELCSEGGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLGNKTS 887
+ S +L + + +++ + +EV K ++PI P + W LLG+ +S
Sbjct: 740 VISDAMKLT---NNIADALKNNKVNIGTIKASLEVLVKCIAPIIPCFSSECWLLLGHNSS 796
Query: 888 ILHSRWPVAGDVDE 901
+ +S WP++ + E
Sbjct: 797 V-YSNWPISKNKKE 809
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 667 RKSFQFWYPVDLRVSGKDLIQNHLTFY-IYNHCAMWPNEEEKWPKGIRANGHLMLNSAKM 725
+ S +P ++ V GKD+I+ H ++ + A P P+ I + H +N KM
Sbjct: 273 KSSLSAGWPANMHVIGKDIIRFHCIYWPAFLMAAGLP-----LPEKILVHSHWTMNKVKM 327
Query: 726 SKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANF 763
SKS GN + IEK+ D +R L G D+NF
Sbjct: 328 SKSLGNVVDPFWLIEKYGVDTIRYYLLKRGRLTSDSNF 365
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 53 SHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLK 91
S + + T P Y+N HLGH +SL + R+ LK
Sbjct: 17 SKKPYFLTTPIFYVNAAPHLGHLYSLVLTDAIARFQNLK 55
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 64 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKRE 118
P+ NGRLH+GH + + R+ LKGR V + G+ C G+PI++ A K E
Sbjct: 87 PFANGRLHIGHALNKILKDIINRWQLLKGRSVHYVPGWDCHGLPIESKAIKANAE 141
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 6 MLSVRSRQALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPY 65
+LS ++R + + F + +Q+ +++ K +EAP F P P
Sbjct: 16 LLSFKNRNYIHIEAPFDIAAIQDGWNIIRKHIHYPKPKSIEAP-------MFPILLPPPN 68
Query: 66 MNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVY 122
+ G+LH+GH +++ + R+Y + G V F G G+ ++ +K ++ VY
Sbjct: 69 ITGKLHIGHALTITIQDALARFYAMHGYKVSFRPGTDHAGIATQSVVEKYLQKKGVY 125
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 504 KLIQEGKAVIYYEPEKTIIS---RSGDECVVALCNQWYLDYGNEEWKGQAEKALEAMNTY 560
+L+Q+ ++ P I+S R+GD + QWYL + K + K+ +
Sbjct: 362 RLLQQRNRLVEQVPHSLILSVCSRTGDVIEPVMVPQWYLSV--DSLKKEVLKSSNKLKLV 419
Query: 561 HDEVRKNFQATLKWLHEYACSRTYGLGTKLP 591
RK + + K + ++ SR G ++P
Sbjct: 420 PSLARKEWDSWFKKMGDWCISRQIWWGHQIP 450
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 41.5 bits (93), Expect = 7e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 20/217 (9%)
Query: 199 LKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDH 258
++R+G +D+ + T P + + W F L + K+ G R +S P +
Sbjct: 129 VERLGRWIDFDNDYKTL--YPSFMESVWWVFKELHTKGKVYRGYRVMPYSTACTTPLSNF 186
Query: 259 DRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHPDI 318
+ Q Y K V + S+ ++S +A T P T+ VHPD+
Sbjct: 187 EAQ-------QNY---KEVPDPAIVVAFQSISDPEVSFLAWTTTPWTLPSNLALAVHPDL 236
Query: 319 KYIAFETVKDGVFICTKRAARNMSYQDFTEKDGEFKILLEIVGQDLLGLSVQSPFTCYPK 378
+YI + + Y++ K F+IL G+ L G + F +
Sbjct: 237 QYIKILDKDSNKKYILMESCLGILYKN--PKKANFEILERFQGKALDGQKYEPLFPYFKS 294
Query: 379 IY---ALPMLT---IKEDKGTGIVTSVPSDSPDDYAA 409
+ A + + ++E GTGIV P+ DY A
Sbjct: 295 TFGERAFKLYSADYVEEGSGTGIVHQAPAFGEADYDA 331
Score = 35.5 bits (78), Expect = 0.045
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 30 EKKVQERWESQKIFEVEAP-DDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYY 88
E+K+ E W F + G+ F P P+ GR H GH + + + RY
Sbjct: 9 EEKIVEFWREIDAFHTQLKLSQGRPTYTFF-DGP-PFATGRPHHGHLLASTIKDSVTRYA 66
Query: 89 RLKGRMVLFPFGFHCTGMPIKACADK 114
LKG V FG+ G+P++ DK
Sbjct: 67 CLKGYHVERRFGWDTHGLPVEHEIDK 92
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 716 GHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRL 749
GHL + KMSKS NF+T+ E ++KF+ +RL
Sbjct: 400 GHLHIEGQKMSKSLKNFITIKEILKKFTPRQLRL 433
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 31.5 bits (68), Expect = 0.73
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 6/133 (4%)
Query: 577 EYACSRTYGLGTKLPWDQQWVIESLSDSTIYNAYYTISHFLQGDTFRGNKENTLK-IKPE 635
+ A + TY GT+ W W+ +++ N Y + ++L+ G E + KPE
Sbjct: 95 DLAANTTYRPGTQ-HWPFSWLFPGSLPASVSNRYIKLEYYLEATLCYGTPEGGISPSKPE 153
Query: 636 QMTSEVWDYIFFKEAPLPKNTVIDRKSLDLMRKSFQFWYPVDLRVSGKDLIQNHLTFYIY 695
+ + K A +P I ++ P L G L++ +T +
Sbjct: 154 VLKFP----LQLKRAAIPSPDTIHKRIFPPTNLVANITLPSTLHPHGAALMEVTMTGFAQ 209
Query: 696 NHCAMWPNEEEKW 708
N W W
Sbjct: 210 NDGNDWKINRVTW 222
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 65 YMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFG-------FHCTGMPIKACADKLKR 117
Y++ R GH +YY R VLFPFG F + + +K C ++L+
Sbjct: 668 YLSFRSSRGHCVYGEDVFVGYKYYEAVEREVLFPFGYGLSYTTFELSNLYLKNCGERLRI 727
Query: 118 EMAVYGCPPV 127
++ + P+
Sbjct: 728 DLEISNTGPM 737
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 226 KWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDHDRSTGEGAGPQEYTLIK 275
K + +K+ NK +Y +R + S ++K C HD + E +K
Sbjct: 191 KDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKESDSFKDHEILRLK 240
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 756 DSVEDANFVESTADAAILRLYTFIEWVKEVLASKSTLRSGDYNFHDKVFVSEMNIKILQT 815
+S+ D +++ST A L ++ +W+ + + T+ + Y+ +V+ IK T
Sbjct: 81 ESILDIEYIQSTLPPAYLASFSHDDWISGIQLTSDTILTSSYDGIARVWDKSGEIKFQST 140
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 695 YNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADA 754
++H + NE +K IR LM N +K+ NF +S AD ++ +
Sbjct: 739 WDHLSNHDNEVKKENNRIRNASSLMENPRVSTKTFDNFTLTHDSTINVKADTVKRARQNN 798
Query: 755 GDSVEDANFVE 765
+ +D NF E
Sbjct: 799 IKNKDDVNFSE 809
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 730 GNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKE 784
G+F+ ++SI+ + GM+ D G+ D +F+ D + L L E +KE
Sbjct: 175 GSFI-YNQSIKTYELPGMK-EFQDLGEPKHDYDFIVKADDDSFLNLPRLFEMLKE 227
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,375,618
Number of Sequences: 5004
Number of extensions: 229901
Number of successful extensions: 583
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 29
length of query: 1198
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1117
effective length of database: 1,957,154
effective search space: 2186141018
effective search space used: 2186141018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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