Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
(1198 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8) 312 1e-84
SB_24963| Best HMM Match : BSRF1 (HMM E-Value=2) 293 7e-79
SB_20021| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-41
SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 8e-32
SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09) 41 0.005
SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.009
SB_50366| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.8
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15) 31 5.6
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 31 5.6
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.8
>SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)
Length = 489
Score = 312 bits (765), Expect = 1e-84
Identities = 180/385 (46%), Positives = 224/385 (58%), Gaps = 71/385 (18%)
Query: 14 ALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLG 73
+++RK T KV++L+ IE VQ++WE KIFE++APD G K G
Sbjct: 140 SVERKSTAKVDFLKGIETDVQQQWEKMKIFEIDAPDPGSDAAK---------------KG 184
Query: 74 HTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDEE 133
F C F Y + G++ L H T KACADKLKREM +G PP FP +E
Sbjct: 185 KFF----CTFPYPY--MNGKLHLG----H-TFTLAKACADKLKREMEQFGNPPRFPAVDE 233
Query: 134 LIVKDEDIIPXXXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANESYWLEYFPP 193
+ + YQWQIM+S+G+P+EEI +FA YWL YFPP
Sbjct: 234 NTQDKKQM---------KSKVLAKTGNVTYQWQIMQSLGIPQEEIPKFAETDYWLSYFPP 284
Query: 194 RAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQ 253
A DLK MG+ DWRR +ITTD NP+YDSF++W F +LK+R K+ +GKRYTIFSP D Q
Sbjct: 285 LAKEDLKSMGLKTDWRRSYITTDVNPYYDSFVRWHFWNLKERGKVKFGKRYTIFSPADDQ 344
Query: 254 PCMDHDRSTGEGAGPQEYTLIKMVVLEP---------LPNCLIS-----LKGKKISLVAA 299
PCMDHDR +GEG GPQEY +IKM V+ P +P +S L+GK + LVAA
Sbjct: 345 PCMDHDRQSGEGVGPQEYNVIKMKVVPPFKEKLRYSVIPELFLSHANFVLEGKNVYLVAA 404
Query: 300 TLRPETMYGQT---------------------NCWVHPDIKYIAFET-VKDGVFICTKRA 337
TLRPETMYGQT NCWV PDIKYIAFET V + V+ICT+RA
Sbjct: 405 TLRPETMYGQTNCWVRPDMKVQYLDQRLYGQINCWVRPDIKYIAFETNVPNDVYICTQRA 464
Query: 338 ARNMSYQDFTEKDGEFKILLEIVGQ 362
ARNMSYQ FT K+ IL ++ GQ
Sbjct: 465 ARNMSYQGFTAKESHVNILAKLTGQ 489
>SB_24963| Best HMM Match : BSRF1 (HMM E-Value=2)
Length = 250
Score = 293 bits (718), Expect = 7e-79
Identities = 130/198 (65%), Positives = 167/198 (84%), Gaps = 2/198 (1%)
Query: 666 MRKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKM 725
+R+ FQ+WYPVDLRVSGKDL+ NHLT+Y+YNHCA+WPNE+ KWPKG+RANGHL+LNS KM
Sbjct: 3 LRQEFQYWYPVDLRVSGKDLVPNHLTYYLYNHCAIWPNEKSKWPKGVRANGHLLLNSEKM 62
Query: 726 SKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEV 785
SKS GNFLTL ++I KFS+DGMRL LADAGD++EDANFVE ADA ILRLYTF EW++E+
Sbjct: 63 SKSTGNFLTLRQAINKFSSDGMRLALADAGDTLEDANFVEKMADAGILRLYTFHEWIREM 122
Query: 786 LASKSTLRSG-DYNFHDKVFVSEMNIKILQTDDNYNRMLFKEALKSGFFELQAARDKYRE 844
+ASK LR+G ++ D+VF SE+N I Q + NY +M +++A+K+GF+ELQA+RDKYRE
Sbjct: 123 IASKDQLRTGPKTSYEDRVFESEINQAIRQRELNYEQMTYRDAVKTGFYELQASRDKYRE 182
Query: 845 LCSEGGMHVELVTKYIEV 862
+C GMH +LV ++IEV
Sbjct: 183 MCL-NGMHRDLVFRFIEV 199
>SB_20021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 167 bits (405), Expect = 6e-41
Identities = 72/120 (60%), Positives = 95/120 (79%)
Query: 419 FREKYGIADDMILPFKPVPILETPDFGNLSAVYLYDELKIQSQNDREKLTQAKEMVYLKG 478
FR+KYGI D+M LPF P+PI+ P +G+L AV +++KI+SQNDR+ L +AKE+ Y KG
Sbjct: 2 FRKKYGITDEMALPFNPIPIINVPGYGDLCAVKACEDMKIKSQNDRDLLLEAKELSYKKG 61
Query: 479 FYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALCNQWY 538
FY+G ++VGE G K+Q+VKK +Q K++Q G A IY EPEK +ISRSGDECVVALC+QWY
Sbjct: 62 FYEGTMIVGEFAGQKVQEVKKLVQMKMLQAGDARIYMEPEKLVISRSGDECVVALCDQWY 121
>SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 136 bits (330), Expect = 8e-32
Identities = 74/189 (39%), Positives = 103/189 (54%), Gaps = 5/189 (2%)
Query: 887 SILHSRWPVAGDVDEVAVKASNYLMDAAHSFRVYLKNHCALXXXXXXXXXXXXXXXXXAV 946
SIL++ WPVAGDVDE +K++ YL + H FR+ +KN A +
Sbjct: 3 SILNADWPVAGDVDETLLKSAVYLTSSTHEFRLRIKNLLA-PKGKKQKDAPPPAKPTHGL 61
Query: 947 IWVAKEFPKWQRIILTTLKELNGPDG--LPDNKTISSRLSQLDELRKYSKRVMPFVQATR 1004
++VA FP WQ + LTTLK+L +G PDN+ I + L E++KY K++MPFVQ R
Sbjct: 62 VYVASSFPPWQHVTLTTLKQLYHSNGGAFPDNRIIMNSLKDAAEVKKYMKKLMPFVQYVR 121
Query: 1005 ECVRRDGGXXXXXXXXXXXXXXXRDNAAYLRATLDLDAIEVKYTDSADAPERSREECAPG 1064
V RDG R+N YL+ LDL +E+K + DA + +EECAPG
Sbjct: 122 SNVERDGPSAMDTTVPFNELEVLRENEGYLKKALDLVHLEIKPSSEGDA--KVQEECAPG 179
Query: 1065 QPHITFSAE 1073
+P FSA+
Sbjct: 180 KPFTVFSAQ 188
>SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)
Length = 250
Score = 41.1 bits (92), Expect = 0.005
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 176 EEIKEFANESYWLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDR 235
EE E+A E W E + + LK++G +DW R T D + +Y + I+ F L ++
Sbjct: 40 EEFLEYAWE--WKEKYGGIILQQLKKLGCALDWNRTHFTMD-DEYYAAVIR-VFVDLYNK 95
Query: 236 NKIMYGKRYTIFSPLDKQPCMDHDRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKIS 295
+I G + + P K D + + Y K L G K
Sbjct: 96 GQIYRGVKMINWDPKAKTALSDEEVIHKQTNSKLYYVRYK-------------LDGDKEE 142
Query: 296 LVA-ATLRPETMYGQTNCWVHPD 317
+ AT+RPET+ G T VHP+
Sbjct: 143 YITIATVRPETILGDTAICVHPN 165
>SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 40.3 bits (90), Expect = 0.009
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 199 LKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDH 258
+ R+G +D+ + T P++ + W F L ++N + G + +S + P +
Sbjct: 97 VSRLGRWIDFENDYKTL--YPWFMETVWWVFKQLHEKNMVYRGFKVMPYSTVCNTPLSNF 154
Query: 259 DRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHPDI 318
+ S Q+ + L+ P+ +S++A T P T+ V+ D+
Sbjct: 155 E-SNQNYKEVQDPAVFVSFPLDESPD---------VSMIAWTTTPWTLPSNLALVVNKDM 204
Query: 319 KYIAF-ETVKDGVFICTKRAARNMSYQDFTEKDGEFKILLEIVGQDLLGLSVQSPFTCYP 377
+Y+ + + V+I AAR + E E+ +L G L G + + F +
Sbjct: 205 EYVKVKDNSTEKVYIMM--AARLDALFKTPE---EYTVLERFKGASLEGKTYKPMFPYFE 259
Query: 378 KIY---ALPMLT---IKEDKGTGIVTSVPSDSPDDY 407
++ A +LT + E+ GTG+V S P+ DDY
Sbjct: 260 QLKSSGAFRILTDSYVTEESGTGVVHSAPAFGEDDY 295
>SB_50366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 32.7 bits (71), Expect = 1.8
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 299 ATLRPETMYGQTNCWVHP---DIKYIAFETVKDGVFICTKRAARNMSYQDFTEKDGEFKI 355
A P M G+TN +H I + FE ++G F+ T R A+N +D + G +
Sbjct: 131 ALYSPLIMIGKTNNCIHSLKETISRLKFEEQREGQFMFTSRRAKNEMLEDISMFTGIKLL 190
Query: 356 LLEIVGQDLLGLSVQSPF 373
+E+ + +++ PF
Sbjct: 191 GMELTTLKTVMITLAMPF 208
>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
Length = 458
Score = 31.1 bits (67), Expect = 5.6
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 708 WPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADAGDSVEDANFVEST 767
WPKG G + S +EG F + + ++K D M +ED F +
Sbjct: 336 WPKGFFRRGRALAGLKLFSDAEGAFAHVLK-LDKHCEDAMFELARVRVQQLEDMGFPTNQ 394
Query: 768 ADAAILRLYTFIEWVKEVLASK 789
++AAI T ++ +LA K
Sbjct: 395 SEAAIQSYGTVQAGLEALLAGK 416
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 31.1 bits (67), Expect = 5.6
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 701 WPNEEEKWPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRLTLADAGDS--- 757
W NE KW G R N L ++S + + N T+SE KF +R ADA D+
Sbjct: 100 WYNELYKW-LGNRINA-LAIDSGSKDEIDRNLGTVSEFKRKFETPILRGRDADATDAEHK 157
Query: 758 --VEDANFVESTADAAILRLYTFIEWVKEVLASKS 790
+E V D ++ I+ VKE + ++S
Sbjct: 158 KGIERLTEVYGVFDNLDRFIFPTIDKVKETIPARS 192
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 9.8
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1 MSAVQMLSVRSRQALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCT 60
++A+++ +V + A+D + +V ++E+E+ + ++ + KI+ + PD E CT
Sbjct: 166 VAAMEVAAVADQTAVDTQIVVQVMAVEEVEEMIDKKLQKPKIWIYKHPDGSSKGE---CT 222
Query: 61 FPY 63
Y
Sbjct: 223 VTY 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,963,245
Number of Sequences: 59808
Number of extensions: 1611291
Number of successful extensions: 3214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3197
Number of HSP's gapped (non-prelim): 15
length of query: 1198
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1108
effective length of database: 11,438,737
effective search space: 12674120596
effective search space used: 12674120596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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