GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
         (1198 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   6.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 452  LYDELKIQSQNDREKLTQAKEMVYLKGFYDGVLLVGEHKGSKIQDVKKNLQTKL---IQE 508
            LY +   ++Q  RE+ T A +        DG ++  EHKG K     K LQ      + +
Sbjct: 2492 LYRQQFDRAQGGREEFTMAHDS-------DGAVIQAEHKGIKHMAYDKLLQRVSEIEMTD 2544

Query: 509  GKAVIY-YE--PEKTIIS-RSGDECVVALCNQWYLDYGN 543
            G+ ++Y Y+   E+T    R+ DE V  L  ++Y+   N
Sbjct: 2545 GRKILYQYDVRAERTFKQVRAKDETV--LSEKYYIRDAN 2581


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,206,275
Number of Sequences: 2123
Number of extensions: 48061
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 1
length of query: 1198
length of database: 516,269
effective HSP length: 72
effective length of query: 1126
effective length of database: 363,413
effective search space: 409203038
effective search space used: 409203038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)