Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001037-TA|BGIBMGA001037-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR002308|Cysteinyl-tRNA synthetase, class Ia, IPR013155|tRNA
synthetase, valyl/leucyl, anticodon-binding, IPR004493|Leucyl-tRNA
synthetase archae/euk cytosolic, class Ia, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
(1198 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p... 1212 0.0
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p... 1212 0.0
Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical pr... 52 2e-06
AL132876-18|CAD21672.2| 406|Caenorhabditis elegans Hypothetical... 52 2e-06
AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRN... 52 2e-06
Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical pr... 50 1e-05
AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA s... 50 1e-05
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 40 0.008
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 36 0.13
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 36 0.13
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 36 0.13
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 36 0.23
Z68296-3|CAB54197.2| 223|Caenorhabditis elegans Hypothetical pr... 34 0.53
U28992-1|AAA68389.1| 283|Caenorhabditis elegans Hypothetical pr... 33 1.6
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 32 2.1
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 32 2.1
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 31 3.7
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 31 3.7
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 31 3.7
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 31 3.7
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 31 4.9
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 31 6.5
U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore co... 31 6.5
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 31 6.5
U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical pr... 30 8.6
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 30 8.6
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 30 8.6
>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 1212 bits (3003), Expect = 0.0
Identities = 588/1172 (50%), Positives = 768/1172 (65%), Gaps = 25/1172 (2%)
Query: 22 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKC 81
KV LQEIEK +QE WES+K FE +A DDGK K+L TFP+PYMNGRLHLGHTFS SKC
Sbjct: 10 KVAQLQEIEKSIQELWESKKAFEADARDDGKP--KYLVTFPFPYMNGRLHLGHTFSASKC 67
Query: 82 EFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDEELIVKDE-- 139
EFA + RL+G+ VLFPFGFHCTGMPIKACADKLKREM +G PP FPED VK+E
Sbjct: 68 EFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFPEDVVEEVKEEVS 127
Query: 140 --DIIPXXXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANESYWLEYFPPRAVT 197
D I YQWQIMKS+G+ +EEIKEF++ ++WL YFPP +
Sbjct: 128 AVDEIIKDKSKGKKSKLVAKTGNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPPHCIA 187
Query: 198 DLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMD 257
DLK+MG+ DWRR FITTD NP++DSF++WQFN L+ KI +GKRYTI+SP D QPCMD
Sbjct: 188 DLKKMGLKADWRRSFITTDVNPYFDSFVRWQFNLLRAAKKIDFGKRYTIYSPKDGQPCMD 247
Query: 258 HDRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHPD 317
HDR++GEG GPQEYTLIK+ VL+P P L +K + I LVAATLRPETMYGQTNC++HPD
Sbjct: 248 HDRASGEGVGPQEYTLIKLKVLDPKPQALSHIK-EDIYLVAATLRPETMYGQTNCYLHPD 306
Query: 318 IKYIAFETVKDG--VFICTKRAARNMSYQDFTEKDGEFKILL---EIVGQDLLGLSVQSP 372
I+Y F ++ VF+ T R+AR MSYQ T+++G+ +L +I G +LG + +P
Sbjct: 307 IQYSVFYATENEKQVFVATARSARIMSYQGLTKENGKVNYVLGLEKIAGSKILGAPLSAP 366
Query: 373 FTCYPKIYALPMLTIKEDKGTGIVTSVPSDSPDDYAALVDLQKKPAFREKYGIADDMILP 432
Y ++YALPMLTIK+DKGTG+VTSVPSDSPDD+AAL DL+KK REKYG+ D+M+LP
Sbjct: 367 LAKYERVYALPMLTIKDDKGTGVVTSVPSDSPDDFAALSDLKKKKPLREKYGLTDEMVLP 426
Query: 433 FKPVPILETPDFGNLSAVYLYDELKIQSQNDREKLTQAKEMVYLKGFYDGVLLVGEHKGS 492
F+PVPI++ G+L+AV + LKI+SQN+++KL +AK+ VYLKGFYDGV+LVG++ G
Sbjct: 427 FEPVPIIKIEGLGDLAAVEMCSRLKIESQNEKDKLEEAKKEVYLKGFYDGVMLVGKYAGK 486
Query: 493 KIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALCNQWYLDYGNEEWKGQAEK 552
K DVKK +Q L EG A Y EPEK ++SRSGDECVVALC+QWYL+YG EWK A+K
Sbjct: 487 KTADVKKVIQDDLTAEGLATKYVEPEKKVMSRSGDECVVALCDQWYLNYGEAEWKAAAKK 546
Query: 553 ALEAMNTYHDEVRKNFQATLKWLHEYACSRTYGLGTKLPWDQQWVIESLSDSTIYNAYYT 612
LE + T++DE R+ + T+ WLHEYACSR+YGLGTKLPWD Q++IESLSDSTIYNAYYT
Sbjct: 547 VLEPLRTFNDETRRGLETTVDWLHEYACSRSYGLGTKLPWDTQYLIESLSDSTIYNAYYT 606
Query: 613 ISHFLQGDTFRGNKENTLKIKPEQMTSEVWDYIFFKEAPLPKNTVIDRKSLDLMRKSFQF 672
++H LQ F G+ IK +QMT W Y+F E K ++ + L +RK F +
Sbjct: 607 VAHLLQQGAFDGSVVGPAGIKADQMTDASWSYVFLGEIYDSKTMPVEEEKLKSLRKEFMY 666
Query: 673 WYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNF 732
WYP+D+R SGKDLI NHLT+ ++NH A+WP + KWPKGIRANGHL+LN+ KMSKS GNF
Sbjct: 667 WYPIDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNF 726
Query: 733 LTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEVLASKST- 791
+TL E+IEKFSADGMRL+LADAGD +EDANFV + ADAAILRL+T IEW+KE++ +
Sbjct: 727 MTLEEAIEKFSADGMRLSLADAGDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAG 786
Query: 792 -LRSGDYNFHDKVFVSEMNIKILQTDDNYNRMLFKEALKSGFFELQAARDKYRELCS--E 848
LR F D+VF +EMN I T+ NY FK+ALK+GFFE QA RD YRELC+ +
Sbjct: 787 LLRKDAKKFADRVFANEMNSLIAATEQNYEATNFKDALKTGFFEYQAIRDTYRELCAGID 846
Query: 849 GGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLGNKTSILHSRWPVAGDVDEVAVKASN 908
M LV ++IE Q ++SPICPH+AEY+W+LLG I+++ WP VDE +
Sbjct: 847 EPMSESLVFRFIETQMLILSPICPHIAEYIWQLLGKDGLIVNAPWPTVDPVDEKLAIGAR 906
Query: 909 YLMDAAHSFRVYLKNHCALXXXXXXXXXXXXXXXXXAVIWVAKEFPKWQRIILTTL-KEL 967
++ ++ FR LK + AVI+VAKE+P WQ+ IL L K+
Sbjct: 907 FITESLAEFRARLKTY---MTPKKKALKEIPEVPTEAVIYVAKEYPPWQKTILDILEKQA 963
Query: 968 NGPDG-LPDNKTISSRLSQLDELRKYSKRVMPFVQATRECVRRDGGXXXXXXXXXXXXXX 1026
+G LPDNK IS + + + L+K++K+ MPFVQ +E + G
Sbjct: 964 KANNGALPDNKAISQLIGKEESLKKFAKKAMPFVQMIKERFEQKGVSALASSSPVDQTSI 1023
Query: 1027 XRDNAAYLRATLDLDAIEVKYTDSADAPERSREECAPGQPHITFSAEX-XXXXXXXXXXX 1085
+N ++ LDLD + +++TD E P P + F+
Sbjct: 1024 LNENIDFIMNALDLDRVTIRHTDEEGIDANIVETTVPLVPMLNFTPNRPTIKLVARNVQI 1083
Query: 1086 XXGLFTLSVDVADGDTXXXXXXXXXXXXXXXXXXTSLKLWRYKDPILGPRK-IPVPGDHE 1144
+F + V + +GD+ + LWRYK+ + G R+ I E
Sbjct: 1084 CNAMFDVDVPIVNGDSVSMVIRKMRRISKAIKPKFEVSLWRYKNAVWGDRQMISYRNPFE 1143
Query: 1145 SKCEVLHDDSVFKVDVNANKVELVSNGTNTEI 1176
+ L D +F + + NK+ + S ++
Sbjct: 1144 ENIQ-LSDADIFNFEAD-NKISVTSGSEKFDL 1173
>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 1212 bits (3003), Expect = 0.0
Identities = 588/1172 (50%), Positives = 768/1172 (65%), Gaps = 25/1172 (2%)
Query: 22 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKC 81
KV LQEIEK +QE WES+K FE +A DDGK K+L TFP+PYMNGRLHLGHTFS SKC
Sbjct: 10 KVAQLQEIEKSIQELWESKKAFEADARDDGKP--KYLVTFPFPYMNGRLHLGHTFSASKC 67
Query: 82 EFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDEELIVKDE-- 139
EFA + RL+G+ VLFPFGFHCTGMPIKACADKLKREM +G PP FPED VK+E
Sbjct: 68 EFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFPEDVVEEVKEEVS 127
Query: 140 --DIIPXXXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANESYWLEYFPPRAVT 197
D I YQWQIMKS+G+ +EEIKEF++ ++WL YFPP +
Sbjct: 128 AVDEIIKDKSKGKKSKLVAKTGNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPPHCIA 187
Query: 198 DLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMD 257
DLK+MG+ DWRR FITTD NP++DSF++WQFN L+ KI +GKRYTI+SP D QPCMD
Sbjct: 188 DLKKMGLKADWRRSFITTDVNPYFDSFVRWQFNLLRAAKKIDFGKRYTIYSPKDGQPCMD 247
Query: 258 HDRSTGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHPD 317
HDR++GEG GPQEYTLIK+ VL+P P L +K + I LVAATLRPETMYGQTNC++HPD
Sbjct: 248 HDRASGEGVGPQEYTLIKLKVLDPKPQALSHIK-EDIYLVAATLRPETMYGQTNCYLHPD 306
Query: 318 IKYIAFETVKDG--VFICTKRAARNMSYQDFTEKDGEFKILL---EIVGQDLLGLSVQSP 372
I+Y F ++ VF+ T R+AR MSYQ T+++G+ +L +I G +LG + +P
Sbjct: 307 IQYSVFYATENEKQVFVATARSARIMSYQGLTKENGKVNYVLGLEKIAGSKILGAPLSAP 366
Query: 373 FTCYPKIYALPMLTIKEDKGTGIVTSVPSDSPDDYAALVDLQKKPAFREKYGIADDMILP 432
Y ++YALPMLTIK+DKGTG+VTSVPSDSPDD+AAL DL+KK REKYG+ D+M+LP
Sbjct: 367 LAKYERVYALPMLTIKDDKGTGVVTSVPSDSPDDFAALSDLKKKKPLREKYGLTDEMVLP 426
Query: 433 FKPVPILETPDFGNLSAVYLYDELKIQSQNDREKLTQAKEMVYLKGFYDGVLLVGEHKGS 492
F+PVPI++ G+L+AV + LKI+SQN+++KL +AK+ VYLKGFYDGV+LVG++ G
Sbjct: 427 FEPVPIIKIEGLGDLAAVEMCSRLKIESQNEKDKLEEAKKEVYLKGFYDGVMLVGKYAGK 486
Query: 493 KIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALCNQWYLDYGNEEWKGQAEK 552
K DVKK +Q L EG A Y EPEK ++SRSGDECVVALC+QWYL+YG EWK A+K
Sbjct: 487 KTADVKKVIQDDLTAEGLATKYVEPEKKVMSRSGDECVVALCDQWYLNYGEAEWKAAAKK 546
Query: 553 ALEAMNTYHDEVRKNFQATLKWLHEYACSRTYGLGTKLPWDQQWVIESLSDSTIYNAYYT 612
LE + T++DE R+ + T+ WLHEYACSR+YGLGTKLPWD Q++IESLSDSTIYNAYYT
Sbjct: 547 VLEPLRTFNDETRRGLETTVDWLHEYACSRSYGLGTKLPWDTQYLIESLSDSTIYNAYYT 606
Query: 613 ISHFLQGDTFRGNKENTLKIKPEQMTSEVWDYIFFKEAPLPKNTVIDRKSLDLMRKSFQF 672
++H LQ F G+ IK +QMT W Y+F E K ++ + L +RK F +
Sbjct: 607 VAHLLQQGAFDGSVVGPAGIKADQMTDASWSYVFLGEIYDSKTMPVEEEKLKSLRKEFMY 666
Query: 673 WYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNF 732
WYP+D+R SGKDLI NHLT+ ++NH A+WP + KWPKGIRANGHL+LN+ KMSKS GNF
Sbjct: 667 WYPIDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNF 726
Query: 733 LTLSESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEVLASKST- 791
+TL E+IEKFSADGMRL+LADAGD +EDANFV + ADAAILRL+T IEW+KE++ +
Sbjct: 727 MTLEEAIEKFSADGMRLSLADAGDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAG 786
Query: 792 -LRSGDYNFHDKVFVSEMNIKILQTDDNYNRMLFKEALKSGFFELQAARDKYRELCS--E 848
LR F D+VF +EMN I T+ NY FK+ALK+GFFE QA RD YRELC+ +
Sbjct: 787 LLRKDAKKFADRVFANEMNSLIAATEQNYEATNFKDALKTGFFEYQAIRDTYRELCAGID 846
Query: 849 GGMHVELVTKYIEVQAKLMSPICPHVAEYVWELLGNKTSILHSRWPVAGDVDEVAVKASN 908
M LV ++IE Q ++SPICPH+AEY+W+LLG I+++ WP VDE +
Sbjct: 847 EPMSESLVFRFIETQMLILSPICPHIAEYIWQLLGKDGLIVNAPWPTVDPVDEKLAIGAR 906
Query: 909 YLMDAAHSFRVYLKNHCALXXXXXXXXXXXXXXXXXAVIWVAKEFPKWQRIILTTL-KEL 967
++ ++ FR LK + AVI+VAKE+P WQ+ IL L K+
Sbjct: 907 FITESLAEFRARLKTY---MTPKKKALKEIPEVPTEAVIYVAKEYPPWQKTILDILEKQA 963
Query: 968 NGPDG-LPDNKTISSRLSQLDELRKYSKRVMPFVQATRECVRRDGGXXXXXXXXXXXXXX 1026
+G LPDNK IS + + + L+K++K+ MPFVQ +E + G
Sbjct: 964 KANNGALPDNKAISQLIGKEESLKKFAKKAMPFVQMIKERFEQKGVSALASSSPVDQTSI 1023
Query: 1027 XRDNAAYLRATLDLDAIEVKYTDSADAPERSREECAPGQPHITFSAEX-XXXXXXXXXXX 1085
+N ++ LDLD + +++TD E P P + F+
Sbjct: 1024 LNENIDFIMNALDLDRVTIRHTDEEGIDANIVETTVPLVPMLNFTPNRPTIKLVARNVQI 1083
Query: 1086 XXGLFTLSVDVADGDTXXXXXXXXXXXXXXXXXXTSLKLWRYKDPILGPRK-IPVPGDHE 1144
+F + V + +GD+ + LWRYK+ + G R+ I E
Sbjct: 1084 CNAMFDVDVPIVNGDSVSMVIRKMRRISKAIKPKFEVSLWRYKNAVWGDRQMISYRNPFE 1143
Query: 1145 SKCEVLHDDSVFKVDVNANKVELVSNGTNTEI 1176
+ L D +F + + NK+ + S ++
Sbjct: 1144 ENIQ-LSDADIFNFEAD-NKISVTSGSEKFDL 1173
>Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical
protein ZK524.3a protein.
Length = 859
Score = 52.0 bits (119), Expect = 2e-06
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 26 LQEIEKKVQERWESQKIFEVEAPDDGKSH---EKFLCTFPYPYMNGRLHLGHTFSLSKCE 82
+ E K +++ W + E+ + S+ +K++ + +PY +GRLH+GH + +
Sbjct: 26 ISENTKMLEKHWSKSLVDSFESSKNKPSNLNGKKYILSM-FPYPSGRLHIGHMRVYTISD 84
Query: 83 FACRYYRLKGRMVLFPFGFHCTGMPIK-ACADK 114
RYYRL G V+ P G+ G+P + A DK
Sbjct: 85 ATARYYRLNGYEVIHPIGWDSFGLPAENAARDK 117
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 866 LMSPICPHVAEYVWELLGNKTSIL-HSRWP-VAGDVD 900
++ CPHVA +W L N S++ +WP V D D
Sbjct: 708 MLQVFCPHVASEMWSALANDGSLVSDQKWPEVDKDAD 744
>AL132876-18|CAD21672.2| 406|Caenorhabditis elegans Hypothetical
protein Y105E8A.20 protein.
Length = 406
Score = 52.0 bits (119), Expect = 2e-06
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 674 YPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNFL 733
+P +V GKD+ + F++Y A P+ + +GH ++++ KMSKS GN +
Sbjct: 147 WPPTCQVIGKDITK----FHLYYWPAFLMAAGLSLPQKVFIHGHWLIDNVKMSKSLGNVV 202
Query: 734 TLSESIEKFSADGMRLTLADAGDSVEDANF 763
SE+I KF+A+G+R L G+ D +F
Sbjct: 203 NPSEAITKFTAEGLRYFLLKHGNPSYDCSF 232
>AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRNA
synthetase (mitochondrial)protein.
Length = 500
Score = 52.0 bits (119), Expect = 2e-06
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 674 YPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRANGHLMLNSAKMSKSEGNFL 733
+P +V GKD+ + F++Y A P+ + +GH ++++ KMSKS GN +
Sbjct: 241 WPPTCQVIGKDITK----FHLYYWPAFLMAAGLSLPQKVFIHGHWLIDNVKMSKSLGNVV 296
Query: 734 TLSESIEKFSADGMRLTLADAGDSVEDANF 763
SE+I KF+A+G+R L G+ D +F
Sbjct: 297 NPSEAITKFTAEGLRYFLLKHGNPSYDCSF 326
>Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical
protein ZK524.3b protein.
Length = 828
Score = 49.6 bits (113), Expect = 1e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 31 KKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRL 90
K + + +ES K P + + L FPYP +GRLH+GH + + RYYRL
Sbjct: 8 KSLVDSFESSK----NKPSNLNGKKYILSMFPYP--SGRLHIGHMRVYTISDATARYYRL 61
Query: 91 KGRMVLFPFGFHCTGMPIK-ACADK 114
G V+ P G+ G+P + A DK
Sbjct: 62 NGYEVIHPIGWDSFGLPAENAARDK 86
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 866 LMSPICPHVAEYVWELLGNKTSIL-HSRWP-VAGDVD 900
++ CPHVA +W L N S++ +WP V D D
Sbjct: 677 MLQVFCPHVASEMWSALANDGSLVSDQKWPEVDKDAD 713
>AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA
synthetase (mitochondrial)protein.
Length = 828
Score = 49.6 bits (113), Expect = 1e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 31 KKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRL 90
K + + +ES K P + + L FPYP +GRLH+GH + + RYYRL
Sbjct: 8 KSLVDSFESSK----NKPSNLNGKKYILSMFPYP--SGRLHIGHMRVYTISDATARYYRL 61
Query: 91 KGRMVLFPFGFHCTGMPIK-ACADK 114
G V+ P G+ G+P + A DK
Sbjct: 62 NGYEVIHPIGWDSFGLPAENAARDK 86
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 866 LMSPICPHVAEYVWELLGNKTSIL-HSRWP-VAGDVD 900
++ CPHVA +W L N S++ +WP V D D
Sbjct: 677 MLQVFCPHVASEMWSALANDGSLVSDQKWPEVDKDAD 713
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 40.3 bits (90), Expect = 0.008
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 37 WESQKIFEVEAPDD----GKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLKG 92
WE + F+ E D + F P P + G LH+GH + + + R+ R+ G
Sbjct: 96 WEKEGFFKPEYIDKLNPGSNPADSFTVCIPPPNVTGNLHVGHALATTVEDTITRFNRMHG 155
Query: 93 RMVLFPFGFHCTGMPIKACADK-LKRE 118
+ LF G G+ + +K LKRE
Sbjct: 156 KRTLFNPGCDHAGIATQVVVEKRLKRE 182
Score = 31.9 bits (69), Expect = 2.8
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 200 KRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDHD 259
+++G VDW R T D P + F + + I R +S + D +
Sbjct: 215 RKLGASVDWDRAVFTMD--PKMCRAVTEAFIRMHESGTIYRSNRLVNWSCALRSAISDIE 272
Query: 260 RSTGEGAGPQEYTLI---KMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHP 316
E G + K + L + ++G +V +T R ETM G + VHP
Sbjct: 273 VDKKELTGSTLIAVPGYDKKIEFGVLNSFAYKIQGSDEEIVVSTTRIETMLGDSGVAVHP 332
Query: 317 D 317
D
Sbjct: 333 D 333
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 36.3 bits (80), Expect = 0.13
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 64 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK 109
PY NG H GH + +F + G VLF G+ C G+PI+
Sbjct: 96 PYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPGWDCHGLPIE 141
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 36.3 bits (80), Expect = 0.13
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 62 PYPYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKL 115
P P + G+LHLGH +++ + CR+ R +G + GF G+ + +K+
Sbjct: 4 PPPNVTGKLHLGHALTVAVEDAICRHQRNQGNKAEWIPGFDHAGIATQVVVEKI 57
Score = 33.5 bits (73), Expect = 0.93
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 15/156 (9%)
Query: 179 KEFANESY-WLEYFPPRAVTDLKRMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNK 237
+EF E + W E L RMG +DW + + T D+ F ++ K F L+ +
Sbjct: 71 EEFVKECHLWGEKCSSEIRQQLTRMGASLDWTQSYYTLDSK-FSEAVTK-AFCILEQEDL 128
Query: 238 IMYGKRY-----TIFSPLDKQPC----MDHDRSTGEGAGPQEYTLIKMVVLEPLPNCLIS 288
I GKR T+ S L Q + D + +K + + L+
Sbjct: 129 ITRGKRLVHWCPTLSSTLSSQEVNRIDVPSDGYINLSSSSGTRRRVKFGQMHVIRYNLVD 188
Query: 289 LKGKKISLVAATLRPETMYGQTNCWVHP-DIKYIAF 323
+ + I + T RPET++ VHP D +Y F
Sbjct: 189 SESEFIEV--GTTRPETLFADVAVAVHPEDDRYSKF 222
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 36.3 bits (80), Expect = 0.13
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 64 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK 109
PY NG H GH + +F + G VLF G+ C G+PI+
Sbjct: 96 PYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPGWDCHGLPIE 141
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 35.5 bits (78), Expect = 0.23
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 30 EKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYR 89
E KV ++W+ + F+ + + K F P+ G H GH + + + R+
Sbjct: 17 EDKVAQKWQDENTFQ-RSVELSKDRPHFTFYDGPPFATGLPHYGHMLTSTIKDVVGRWAH 75
Query: 90 LKGRMVLFPFGFHCTGMPIKACADK 114
G V FG+ G+P++ DK
Sbjct: 76 QNGHYVERRFGWDTHGLPVEYEIDK 100
Score = 31.1 bits (67), Expect = 4.9
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 667 RKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKWP-KGIRANGHLMLNS-AK 724
RK F+ +P D G D + + A++ K P K + NG ++ + AK
Sbjct: 546 RKIFEDNFPADFIAEGIDQTRGWFYTLLVLSTALF----NKPPFKNLICNGLVLASDGAK 601
Query: 725 MSKSEGNFLTLSESIEKFSADGMRLTLADA 754
MSKS+ N+ + K+ AD +RL L ++
Sbjct: 602 MSKSKKNYPDPMLIVNKYGADALRLYLINS 631
Score = 30.7 bits (66), Expect = 6.5
Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 27/219 (12%)
Query: 201 RMGIHVDWRRKFITTDANPFYDSFIKWQFNHLKDRNKIMYGKRYTIFSPLDKQPCMDHDR 260
R+G VD++ + T P++ + W F+ L + + G + FS P + +
Sbjct: 139 RLGRWVDFKHDYKTL--YPWFMESVWWAFSELHKKGLVYKGVKVMPFSTACSTPLSNFE- 195
Query: 261 STGEGAGPQEYTLIKMVVLEPLPNCLISLKGKKISLVAATLRPETMYGQTNCWVHPDIKY 320
AG ++ V L+ ++ LVA T P T+ VHPD+ Y
Sbjct: 196 -----AGQNYKDVVDPAVFVGFK--LLDCPNRQ--LVAWTTTPWTLPSNLALVVHPDMLY 246
Query: 321 IAFETVKDGV-FICTKRAARNMSYQDFTEKDGEFKILLEIVGQDLLGLSVQS--PFTCYP 377
+ + G+ ++ + + K+ +++ ++ G L L + P+ Y
Sbjct: 247 VVTKDKTTGIEYVVLEERLGEL-------KNDNLEVIEKLAGSQLKDLRYEPLFPYFAYM 299
Query: 378 K-----IYALPMLTIKEDKGTGIVTSVPSDSPDDYAALV 411
+ L + D GTG+V P D+ V
Sbjct: 300 REERNAFRVLNDTFVTSDSGTGVVHQAPYFGEIDFQVCV 338
>Z68296-3|CAB54197.2| 223|Caenorhabditis elegans Hypothetical
protein C46C2.5 protein.
Length = 223
Score = 34.3 bits (75), Expect = 0.53
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 398 SVPSDSPDDYAALVDLQKKPAFREKYGIADDMILPFKPVPILETPDFGNLSAVYLYDELK 457
SVP+D P ++ L++ K E Y ++ + + L+ F N+ +Y D +K
Sbjct: 29 SVPADIPSLFSGLLNGLSKNCLTETYSFLTEL----REIETLQNSKFNNVDVLYDKDLMK 84
Query: 458 -----IQSQNDREKLTQAKEMVYLKGFYDGVLLVGEH-KGSKIQDV-KKNLQTKLIQEGK 510
++S + K + M++ K DG + +G++ G + K+NL++ + +
Sbjct: 85 SLFGDLKSISLSIKSSNCSSMIFAKYLLDGTVFIGDNIYGEAFNCLSKENLESLFMSCAR 144
Query: 511 AVI 513
+I
Sbjct: 145 EII 147
>U28992-1|AAA68389.1| 283|Caenorhabditis elegans Hypothetical protein
T05C1.1 protein.
Length = 283
Score = 32.7 bits (71), Expect = 1.6
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1130 PILGPRKIPVPGD-HESKCEV---LHDDSVFKVDVNANKVELVSNGTNTEIATAT 1180
PIL P+ IP+ GD +E+ E+ + DD ++D N +++ N N ++ T T
Sbjct: 129 PILPPKDIPIGGDLNETVTELENGVEDDLEKELDERTNATQILRNEENDDLLTVT 183
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 32.3 bits (70), Expect = 2.1
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 737 ESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEVLASKSTLR--S 794
++IE+ + R + D GD VEDANF+ + WVKE+ R S
Sbjct: 211 DAIEQAGKENRRAKIEDLGDLVEDANFLNALQSGC-------NRWVKEIRKVTQLERDPS 263
Query: 795 GDYNFHDKVF---VSEMNIKILQTDDNYNRMLFKEALKSG 831
+ + F + +KI Q D L EALK G
Sbjct: 264 SGTSLQEMTFWLNLERALLKISQKRDGEEVTLTLEALKCG 303
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 32.3 bits (70), Expect = 2.1
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 737 ESIEKFSADGMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEVLASKSTLR--S 794
++IE+ + R + D GD VEDANF+ + WVKE+ R S
Sbjct: 211 DAIEQAGKENRRAKIEDLGDLVEDANFLNALQSGC-------NRWVKEIRKVTQLERDPS 263
Query: 795 GDYNFHDKVF---VSEMNIKILQTDDNYNRMLFKEALKSG 831
+ + F + +KI Q D L EALK G
Sbjct: 264 SGTSLQEMTFWLNLERALLKISQKRDGEEVTLTLEALKCG 303
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 478 GFYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALC-NQ 536
G Y+G+L++ +K + V + Q + + A +YY P ++S G+ + +C N
Sbjct: 958 GTYNGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGEVMSGVGELAMDLVCTNG 1017
Query: 537 WYLDYGNE 544
Y+ G +
Sbjct: 1018 EYVYEGKQ 1025
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 478 GFYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALC-NQ 536
G Y+G+L++ +K + V + Q + + A +YY P ++S G+ + +C N
Sbjct: 958 GTYNGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGEVMSGVGELAMDLVCTNG 1017
Query: 537 WYLDYGNE 544
Y+ G +
Sbjct: 1018 EYVYEGKQ 1025
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 478 GFYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALC-NQ 536
G Y+G+L++ +K + V + Q + + A +YY P ++S G+ + +C N
Sbjct: 958 GTYNGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGEVMSGVGELAMDLVCTNG 1017
Query: 537 WYLDYGNE 544
Y+ G +
Sbjct: 1018 EYVYEGKQ 1025
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 478 GFYDGVLLVGEHKGSKIQDVKKNLQTKLIQEGKAVIYYEPEKTIISRSGDECVVALC-NQ 536
G Y+G+L++ +K + V + Q + + A +YY P ++S G+ + +C N
Sbjct: 958 GTYNGMLVLWHYKQNGCNRVSISCQATMSENDVAYLYYNPNGEVMSGVGELAMDLVCTNG 1017
Query: 537 WYLDYGNE 544
Y+ G +
Sbjct: 1018 EYVYEGKQ 1025
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 31.1 bits (67), Expect = 4.9
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 408 AALVDLQKKPAFREKYGIADDMILPFKPVPILETPDFG-NLSAVYLYDELKIQSQNDREK 466
A VD+ + E Y DD+ ++ +P+ + DFG + Y D +SQ D
Sbjct: 179 AGKVDIGAFRTYPEGYRPPDDVPSEYQSIPLAKIEDFGVHCKRYYSLDVSFFKSQLDAHI 238
Query: 467 LTQAKEMVYLKGFYDGVLLVG-EHKGSKIQDVKKNL 501
LT ++ L E ++IQD+ + L
Sbjct: 239 LTSLWNSYWISTLSSSPLFSNVEFLNNQIQDINQKL 274
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 30.7 bits (66), Expect = 6.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 23 VEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKC- 81
V L ++ E +++VE+ DG FLC P NG H+ +S C
Sbjct: 920 VNLLNDVFSNFDSIIEKHDVYKVESIGDG-----FLCVSGLPNRNGMEHIRQIVGMSLCF 974
Query: 82 -EFACRYYRL 90
EF CR +R+
Sbjct: 975 MEF-CRNFRI 983
>U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform a protein.
Length = 492
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 679 RVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRAN 715
RV KD+ + + + + ++PNEEEK P+G N
Sbjct: 330 RVELKDVALDEIVVFRHREVTVYPNEEEKAPEGQELN 366
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform b protein.
Length = 1189
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 679 RVSGKDLIQNHLTFYIYNHCAMWPNEEEKWPKGIRAN 715
RV KD+ + + + + ++PNEEEK P+G N
Sbjct: 330 RVELKDVALDEIVVFRHREVTVYPNEEEKAPEGQELN 366
>U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical
protein ZC155.3 protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.6
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 655 NTVIDRKSLDLMRKSFQFWYPVDLRVSGKDLIQNHLTFYIYNHCAMWPNEEEKW 708
+ + DR + KS + ++ +++ + KD N + FYI N +W N+E K+
Sbjct: 343 SAIADRDAFKKEGKSEKSFH-LNMGIETKDRSNNGIHFYINNRLILWGNKEAKF 395
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 704 EEEKWPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRL 749
++ W G L + KMSKS NF+T+ +++E ++ +RL
Sbjct: 548 DDPHWVNYFLHCGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRL 593
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 704 EEEKWPKGIRANGHLMLNSAKMSKSEGNFLTLSESIEKFSADGMRL 749
++ W G L + KMSKS NF+T+ +++E ++ +RL
Sbjct: 547 DDPHWVNYFLHCGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRL 592
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,044,855
Number of Sequences: 27539
Number of extensions: 1243559
Number of successful extensions: 2761
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2690
Number of HSP's gapped (non-prelim): 57
length of query: 1198
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1108
effective length of database: 10,094,651
effective search space: 11184873308
effective search space used: 11184873308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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