Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001036-TA|BGIBMGA001036-PA|undefined
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 34 0.13
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 31 0.95
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 31 0.95
06_02_0111 - 11958372-11958713,11959367-11959633,11959729-119601... 30 2.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 2.9
07_01_0463 + 3502708-3503535 29 3.8
11_06_0087 - 19919224-19922304 29 5.1
10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795... 29 5.1
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 29 5.1
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 5.1
08_02_0584 - 19010345-19010656,19010959-19011018 29 6.7
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 29 6.7
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 8.9
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 23 YQKNPEHHKKYKHPGQAGAFEKKN--EKNPGKLREKRFNPYSSDDKPAKQHKVGDKK--- 77
+ K E K+ K P QA EKK EK P + ++ D+K ++ K +KK
Sbjct: 77 FGKLAEAKKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKKKGDEKKPEEGKKEEKKEEK 136
Query: 78 PDIELENGSGTSESSTVVKIDTVN 101
P ++ E + + SST V + N
Sbjct: 137 PKVKEETKATPAPSSTTVNLQFTN 160
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 31.5 bits (68), Expect = 0.95
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 17 KYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDK 76
K+ +K K+ EH KK+KH + + +K +K+ K ++K + S D K H+ K
Sbjct: 806 KHKDKDRDKDKEH-KKHKHRHKDRSKDKDKDKDKDKKKDKSGHHDSGGDHSKKHHEKKRK 864
Query: 77 KPDIE 81
+E
Sbjct: 865 HEGME 869
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 182 HWRFFYDPPEFQAVLKIKGKSEYHIGYFRDDPNDEPVFLASNDI 225
H R FYD P + L++ GK+ + +P EPV L S D+
Sbjct: 97 HARIFYDFPRRRFALEVLGKNGCLVEGVLHEPGGEPVKLDSQDL 140
>06_02_0111 -
11958372-11958713,11959367-11959633,11959729-11960124,
11961246-11961320
Length = 359
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 138 FFDCLNTDDAIVKICSSVNLELI--GPFELLLGKLPQLD-DKELYLVHWRFFYD 188
F++ L T D++ CSS++L+ + P EL K+P D D+ L L++ D
Sbjct: 133 FYERLFTSDSVHFFCSSISLQWLSKAPEELAKRKIPMYDSDERLRLLNHEIVAD 186
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 199 KGKSEYHIGYFRDDPNDEPVFLASNDINLKKLFDKLQAAKTQSEKDNLLSDLQPIITYAS 258
K + E +G+ + E FL D N KL + K+ ++K D+Q I+ Y
Sbjct: 3453 KDEEEMEVGHLNESSGIEVGFLVKEDTNKIKLLEADSNIKSNADK----KDIQ-ILQYEH 3507
Query: 259 IAMDECDFGTGVEMGINLF 277
DE +FGT +LF
Sbjct: 3508 --TDESEFGTNDPKSDSLF 3524
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 19 GEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKP 78
G+K ++ E K + G +K ++ GK +EK+ + D+K K+ K DK
Sbjct: 102 GKKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGKKKEKKKDK-DGDEKEGKKEKKKDKDG 160
Query: 79 DIELE 83
D E E
Sbjct: 161 DEEEE 165
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 104 HALKLPKNITYYDSSDHSVLKELFLVKMPSDF-YKFFDCLNTDDAIVKICSSVNLELIG- 161
H KLP+NIT D S +S+ L ++ P F T IC S +L ++
Sbjct: 614 HIPKLPRNITILDISINSLSGPLPKIQSPKLLSLILFSNHITGTIPESICESQDLFILDL 673
Query: 162 PFELLLGKLPQLD 174
LL+G+LP+ D
Sbjct: 674 ANNLLVGELPRCD 686
>10_06_0084 -
10477880-10477897,10477940-10478002,10479523-10479575,
10479774-10480589,10480889-10480998,10481338-10482068
Length = 596
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 219 FLASNDINLKK--LFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECD 265
++ N I L++ + L+A K E DNLL ++ P + + I ECD
Sbjct: 327 YMKENFIVLRRPIFLEALEALKANGESDNLLREVNPHLAFEGI---ECD 372
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 211 DDPNDEPVFLASND-INLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTG 269
DD +D LA ++ ++L K+ K A ++ L +P + S +DE G G
Sbjct: 380 DDRDDGSSLLAKSEGLDLPKVGQKRIALDEENSFPKRLKMTEPRFSSGSFMVDELSAGVG 439
Query: 270 VEMGINLFCSGLKELESNVLGCICP 294
E+ + C +L S ++ C+ P
Sbjct: 440 QELEKDHGCDFRVQLYS-LINCLSP 463
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.1 bits (62), Expect = 5.1
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 7 SNAEDSRTVCKYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDK 66
SN EDS K +K PEH K+PG G + G L EK + +K
Sbjct: 175 SNFEDSTPNAKVD---IEKQPEHEDATKNPGGPG-------QGDG-LTEKPLESELTPEK 223
Query: 67 PAKQHKVGDKKPDIELENGSGTSESSTVVK 96
P++ V +K+ ++ SESST V+
Sbjct: 224 PSQDDIVAEKQSQSSVDVPK-QSESSTTVQ 252
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 28 EHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSG 87
EHHK+ K + A E K EK + +EK + KPAK+ K +K + E
Sbjct: 11 EHHKEEKKDKEH-AKEAKPEKEKKEKKEKNGEEAA---KPAKEKKEKKEKKEKGKEKKEK 66
Query: 88 TSESSTVVKI 97
E++ V K+
Sbjct: 67 VEETTDVAKL 76
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 25 KNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELEN 84
+ P H + G A A +++ G+ P S+DD P + P+ +
Sbjct: 66 ETPPHPGRRTPSGGAAARQQRQNWTGGRFPPTPSTPMSTDDVPLSSEAGDEDTPETDGGG 125
Query: 85 GSGTSESSTVV 95
G G +T V
Sbjct: 126 GGGAGADATPV 136
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 36 PGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVV 95
P +AG E K E + + + + ++ D+PAK+ + P E + E TVV
Sbjct: 162 PPEAGTEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPEEKTVV 221
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,247,400
Number of Sequences: 37544
Number of extensions: 453509
Number of successful extensions: 986
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 16
length of query: 325
length of database: 14,793,348
effective HSP length: 82
effective length of query: 243
effective length of database: 11,714,740
effective search space: 2846681820
effective search space used: 2846681820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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