Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001036-TA|BGIBMGA001036-PA|undefined
(325 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 38 0.007
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 32 0.60
At1g56660.1 68414.m06516 expressed protein 31 0.79
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00... 31 1.0
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 31 1.4
At5g53440.1 68418.m06641 expressed protein 30 2.4
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 30 2.4
At1g07840.2 68414.m00851 leucine zipper factor-related similar t... 29 3.2
At1g07840.1 68414.m00850 leucine zipper factor-related similar t... 29 3.2
At2g25640.1 68415.m03073 transcription elongation factor-related... 29 4.2
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 29 5.6
At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein ... 29 5.6
At1g51230.1 68414.m05762 hypothetical protein similar to hypothe... 29 5.6
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 28 7.4
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 28 7.4
At2g22250.2 68415.m02642 aminotransferase class I and II family ... 28 7.4
At2g22250.1 68415.m02641 aminotransferase class I and II family ... 28 7.4
At1g34560.1 68414.m04295 hypothetical protein 28 7.4
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ... 28 9.8
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 28 9.8
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 28 9.8
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 20 EKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPD 79
E C Q +P H + A ++ NP K+ ++ P S+ D PAK+ K + PD
Sbjct: 279 ENCSQWHPLRHASMVAIESSSARDRNLFPNPSKIFDQDHVPPSNTDSPAKKQKTSSQSPD 338
Query: 80 IELENGSGT 88
++ ++ T
Sbjct: 339 VQNDSREET 347
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 34 KHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPD 79
K P A A + K E K EK+ ++KP ++ K +KKPD
Sbjct: 157 KPPEIAKAEDGKKETEAAKTEEKKEGDKKEEEKPKEEAKPDEKKPD 202
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 EKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPD 79
E+ +++ + +KK K ++G EKK K P K ++++ S++DK K K +K D
Sbjct: 167 EELEEEDGKKNKK-KEKDESGTEEKK--KKPKKEKKQKEESKSNEDKKVKGKKEKGEKGD 223
Query: 80 IELEN 84
+E E+
Sbjct: 224 LEKED 228
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 24 QKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELE 83
+K+ + +KK K ++ A EKK K P K ++++ +DK K K +KP+ E E
Sbjct: 244 EKDSKKNKK-KEKDESCAEEKK--KKPDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDE 300
Query: 84 NGSGTSESSTVVKID 98
+T ++D
Sbjct: 301 GKKTKEHDATEQEMD 315
>At2g16290.1 68415.m01865 F-box family protein contains Pfam
PF00646: F-box domain;
Length = 415
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 183 WRFFYDPPEFQAVLKIKGKS-EYHIGY-FRDDPNDEPVFLASNDINLKKLFDKLQAAKTQ 240
WR P + L IK ++ G+ F D P D+P F +S D LK + L T
Sbjct: 35 WRSVVPPLDHSRCLGIKTHDISFNAGFTFSDQPTDQPPFKSSVDCTLKNIPIYLVKFWTP 94
Query: 241 SEKDNLLSDLQ 251
D L+++++
Sbjct: 95 YGDDYLIAEMR 105
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 198 IKGKSEYHIGYFRDDPNDEPVFLASNDINLKKL-FDKLQAAK 238
+ G ++ + YF +DPND P A++ N+K+ +K +AAK
Sbjct: 783 VGGNTDALVHYFGEDPNDYPFEQAAHQENVKQAELEKKKAAK 824
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 19 GEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 77
G++ ++ K KH G+ + + +K +++K DD+P K+H D+K
Sbjct: 216 GDRVLTSGDDYIKDGKHKGEKSRDKYREDKEEEDIKQK--GDKQRDDRPTKEHLRSDEK 272
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 29.9 bits (64), Expect = 2.4
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
Query: 6 NSNAEDSRTVCKYGEKCYQKNPEHH-KKYKHPGQAGAFEK-KNEKNPGKLREKRFNPY-- 61
+ ++ R K K +K EHH KK K + G K + EK+PG + F
Sbjct: 5 SKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRKPRVEKDPGIPNDWPFKEQEL 64
Query: 62 -SSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVNPIHALK-LPKNITYYDSSD 119
+ + + A+ + ++K + E + V DT ++ LPK + D+S+
Sbjct: 65 KALEVRRARALEEIEQKKEARKERAK-KRKLGLVDDEDTKTEGETIEDLPKVVNVRDNSE 123
Query: 120 HSVLKELFLVKMPSDFYKFFDCLNTDDAIVKICSSVNLELI--GPFELLLGKLPQLD 174
+ KEL V SD + L+ D + C+ + ++ GP + L+ L ++D
Sbjct: 124 RAFYKELVKVIELSDV--ILEVLDARDPLGTRCTDMERMVMQAGPNKHLVLLLNKID 178
>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 22 CYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 77
C + E YK A ++ ++++ G R +F P S +DK +KQ + +K
Sbjct: 138 CEAQKSEDLSNYKPKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARK 193
>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 22 CYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKK 77
C + E YK A ++ ++++ G R +F P S +DK +KQ + +K
Sbjct: 138 CEAQKSEDLSNYKPKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARK 193
>At2g25640.1 68415.m03073 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 643
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 30 HKKYKHPGQAGAFEKKNEKNPGKLREK 56
+KKYK G++ F K++ NP KLREK
Sbjct: 284 NKKYKEKGRSLLFNLKDKSNP-KLREK 309
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 31 KKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELEN 84
K + P +A EK K G ++K S+ KPA + +K P++ L++
Sbjct: 74 KPKRKPRKAATQEKVKSKETGSAKKKNLKE-SATKKPANVGDMSNKSPEVTLKS 126
>At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein low
similarity to SP|P03958 Adenosine deaminase (EC 3.5.4.4)
(Adenosine aminohydrolase) {Mus musculus}; contains Pfam
profile PF00962: Adenosine/AMP deaminase
Length = 355
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 145 DDAIVKICSSVNLELIGPFELLLGKLPQLDDKELYL-VHWRFFYDPPEFQAVLKIKGKSE 203
D +V I S N L+G + L L D +L++ +H +P E QA+L K
Sbjct: 180 DVGVVGIDLSGN-PLVGEWSTFLPALQYAKDNDLHITLHCGEVPNPKEIQAMLDFKPHRI 238
Query: 204 YHIGYFRDD 212
H +F+D+
Sbjct: 239 GHACFFKDE 247
>At1g51230.1 68414.m05762 hypothetical protein similar to
hypothetical protein GB:AAD30637
Length = 125
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 46 NEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELE 83
NE +PG + S DDKP + HK+ K P +E
Sbjct: 19 NELSPGIILNIACRKGSIDDKPTRFHKLNFKDPSYVIE 56
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 6 NSNA-EDSRTVCKYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKL-REKRFNPYSS 63
N N +D K EK + E KK K + E+K ++ KL +EK+
Sbjct: 54 NGNGPKDKEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKE 113
Query: 64 DDKPAKQHKVGDKKPDIELE 83
++ K+ K +KK E E
Sbjct: 114 KERKEKERKAKEKKDKEESE 133
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 45 KNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIE 81
++E+ K R+K + + +KP K+ G KPD+E
Sbjct: 341 ESEEKKMKKRKKEVSEVAESEKPMKKAAKGKLKPDVE 377
>At2g22250.2 68415.m02642 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 475
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 213 PNDEPVFLASNDINLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTG--- 269
PND +S D++L L+ +KT D + +Q + +A E DF T
Sbjct: 58 PNDAETLSSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVV 117
Query: 270 VEMGINLFCSGLKELESN 287
E GIN G N
Sbjct: 118 AEAGINAIREGFTRYTLN 135
>At2g22250.1 68415.m02641 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 428
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 213 PNDEPVFLASNDINLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTG--- 269
PND +S D++L L+ +KT D + +Q + +A E DF T
Sbjct: 11 PNDAETLSSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVV 70
Query: 270 VEMGINLFCSGLKELESN 287
E GIN G N
Sbjct: 71 AEAGINAIREGFTRYTLN 88
>At1g34560.1 68414.m04295 hypothetical protein
Length = 180
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 49 NPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVNPIHALKL 108
N L+E R++PY+ K ++HK ++ + +E +E+ ++ D
Sbjct: 11 NKRLLQESRYSPYTLGTKEKQKHKQKEEAVQLGVELSLFVAEAMFLLS-DAYYVFETYIK 69
Query: 109 PKNITYYDSSDHS 121
PKN Y D S
Sbjct: 70 PKNGVYKDGGKSS 82
>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
PF03556: Domain of unknown function (DUF298)
Length = 295
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 10 EDSRTVCKYG----EKCYQKNPEHHKKYKHP 36
+D+ CK G E C + EHHK Y+ P
Sbjct: 187 KDTSLFCKCGDTESESCLYQEDEHHKDYRRP 217
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 24 QKNPEHHKKYKHPGQAGAFE-----KKNEKNPGKLREKRFNPYSSDDKPAKQH---KVGD 75
+K E + K HPG E + ++ EK S D +P K+ K
Sbjct: 48 RKQLEQYLK-SHPGNPAIAEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGRTKSPV 106
Query: 76 KKPDIELENGSGTSESSTVVKIDTVNPIHALKLPKNIT 113
K D E E G E ++ VK +NP + +N+T
Sbjct: 107 SKKDAEGEKSEGGGEENSHVKDTEMNPPEGIAENENVT 144
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles PF00168:
C2 domain; contains PF02893: GRAM domain; similar to
Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length(GI:6980525); similar to Synaptotagmin III (SytIII)
(Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 185 FFYDPPEFQAVLKIKGKSEYHIGYFRDDPNDEPVFLASNDINLKKLFDKLQAAKTQSEKD 244
F D + ++ +++G +E IG ++ + + E V + LK ++A K E+
Sbjct: 1096 FASDSSFYASLTELQGTTEVQIGPWKAENDGESVKRVVS--YLKAATKLIKAVKGTEEQT 1153
Query: 245 NLLSDLQPIITYASIAMDECDFGTGVEMGINLFC 278
L +D + AS+A + FG ++ + L+C
Sbjct: 1154 YLKADGEVYAVLASVATPDVPFGGTFKVEV-LYC 1186
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,738,364
Number of Sequences: 28952
Number of extensions: 407508
Number of successful extensions: 1153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 29
length of query: 325
length of database: 12,070,560
effective HSP length: 81
effective length of query: 244
effective length of database: 9,725,448
effective search space: 2373009312
effective search space used: 2373009312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -