Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001035-TA|BGIBMGA001035-PA|IPR000644|CBS, IPR001093|IMP
dehydrogenase/GMP reductase, IPR005990|IMP dehydrogenase
         (512 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   8.0  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 359 GGIQSVGHII-KSLALGASTVMMGSLLAGTSEAPGEYF 395
           GGI+ + HII K L +  S V+MG+ LA  SE   E F
Sbjct: 129 GGIELISHIISKQLHIPVS-VLMGANLA--SEVANEMF 163


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 241 GAAIGTRDTDRERLKLLVNNGVDVI 265
           G+ I TR    ER++L   NG+DV+
Sbjct: 324 GSVINTRG---ERIQLTEKNGIDVL 345


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,795
Number of Sequences: 429
Number of extensions: 6142
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 512
length of database: 140,377
effective HSP length: 61
effective length of query: 451
effective length of database: 114,208
effective search space: 51507808
effective search space used: 51507808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)